Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq11692 87.8 2e-12 seq30076 84.2 3e-11 >seq11692 Length=22366 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 19502 CCTGCTGACGAGCAGGAGACATTTTTATTCCTCTATAGCTCAATCGGCAGAGCATCTGAC 19561 ||||||| ||| | || || | ||||| | |||||||| |||| |||||| |||| Sbjct 13731 CCTGCTGTTGAGTAAGATACGTGCACATTCCGCGATAGCTCAGTCGGTAGAGCAAATGAC 13790 Query 19562 TGTTAATCAGAGGGTTCCTGGTTCGAGTCCAGGTGGAGGAG 19602 ||||||||| |||| |||||||||||||||||| | |||| Sbjct 13791 TGTTAATCATTGGGTCCCTGGTTCGAGTCCAGGTCGCGGAG 13831 >seq30076 Length=4501 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 19529 TTCCTCTATAGCTCAATCGGCAGAGCATCTGACTGTTAATCAGAGGGTTCCTGGTTCGAG 19588 |||| | |||||||| |||| |||||| ||||||||||||| |||| ||||||||||| Sbjct 3583 TTCCGCGATAGCTCAGTCGGTAGAGCAAATGACTGTTAATCATTGGGTCCCTGGTTCGAG 3642 Query 19589 TCCAGGTGGAGGAG 19602 ||||||| | |||| Sbjct 3643 TCCAGGTCGCGGAG 3656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633836568762000