Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq39 132 9e-29 seq3 123 5e-26 seq34 100 5e-19 seq5 100 5e-19 >seq39 Length=123855249 Score = 132 bits (146), Expect = 9e-29 Identities = 201/280 (72%), Gaps = 13/280 (5%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | |||||||||||||||||| ||||| Sbjct 64175050 ATGCTCTTAGCTGAGTGTCCCGTGGGGCCCRAAGCGTTTACTTTGAAAAAATTACAGTGT 64175109 Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| ||| |||||| ||| |||||||| ||||||||| | || Sbjct 64175110 TCAAAGCAGGCCCAAGCTGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-CGTGG 64175168 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA--TAGTCGGGGGTGT 212 ||||||||||||||||| | ||| | | |||||||| ||||| | | | | Sbjct 64175169 TTCTATTTTGTTGGTTT-TCGGAACTGAGGGATGATTAAGAGGGACGTCCTTAAGAAGGA 64175227 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 | | | | |||||||||||||||||| | ||||| || | ||||||| Sbjct 64175228 CGG----CCGCCGCTAGAGGTGAAATTCTTGGACCCGTGCAAGACGRACCAGAGCGAAAG 64175283 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | || ||||| || ||||||||||||| ||| |||||| Sbjct 64175284 CATTTGCCAAGAATATTTTCATTAATCA-AGAATGAAAGT 64175322 >seq3 Length=74388519 Score = 123 bits (136), Expect = 5e-26 Identities = 203/283 (72%), Gaps = 14/283 (5%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| || | ||| | | | |||||||||||||||||| ||| Sbjct 26805657 ATGCTCTTAGCTGAGTGTCCCCSAGGGCCTGAAGCATTTACTTTGAAAAAATTAA--TGT 26805600 Query 98 TCAAAGCAGGCCTTTGCTCGA----ATACATTAGCATGGAATAATAGAATAGGACGTGCG 153 |||||||||||| || ||| |||| ||| |||||||| ||||||||| ||| Sbjct 26805599 TCAAAGCAGGCCCAAGC-CGACTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCG 26805542 Query 154 GTTCTATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212 |||||||||||| |||| | ||| | | | |||||| | |||||| | |||| | Sbjct 26805541 ATTCTATTTTGTTAGTTT-TCGGAGCTGAGGCCATGATTGAGAGGGATGACCAGGGGCAT 26805483 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||||| | |||||||||||||||| | | ||||| || | |||||| Sbjct 26805482 TTGTATTGTGCCGCTAGAGGTGAAATTCTTG--TCTGGGCAAGACGGACCAGAACGAAAG 26805425 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 | || ||||| ||||||||||||| | | |||||||||| || Sbjct 26805424 CATTTGCCAAGAATGTTTTCATTAA-CCGAGAACGAAAGTCAG 26805383 >seq34 Length=88915096 Score = 100 bits (110), Expect = 5e-19 Identities = 166/233 (71%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATT--AGAGTGTTCAAAGCAGGCC----TTTGCTCGAATACATTAG 127 ||||||||||||||||| |||||||| |||||||| | || |||| |||| || Sbjct 63551958 TTTACTTTGAAAAAATTAGAGAGTGTTTAAAGCAGGTCCGAGTTGCCTCG-ATACCACAG 63551900 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 | ||||||||| ||||||| || ||||||||||||||||| || | | || | || Sbjct 63551899 CTAGGAATAATA-AATAGGATGT-CGGTTCTATTTTGTTGGGTTTTGGAACTGAGTCCAT 63551842 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||| ||||| || | ||| | ||||| | |||||| ||||| ||||| Sbjct 63551841 GATTAAGAGGGACAGCCAAGGGCATTTGTATTGTTCCGCTAGAGGTAAAATT-TTGGACC 63551783 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 |||| || | | |||||| || || || ||||||||||| |||| Sbjct 63551782 GGAGTAAGATGGACCAGAGTGAAAGCATTTGCCTAGAATGTTTTCATTCATCA 63551730 >seq5 Length=63240551 Score = 100 bits (110), Expect = 5e-19 Identities = 135/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| ||||||||| ||||||||||||||||||| | || | | ||||| Sbjct 63237184 GGAATAATGGAATAGGACCAT-GGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 63237242 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATT-CAATTGTCAGAGGTGAAATTCTTGGATTTA 249 ||| |||||| | || || | |||| || || | ||||||||||||||||| | Sbjct 63237243 TAAGAGGGATGGCTGGAGGCATTCATATTGCACTTCT-AGAGGTGAAATTCTTGGTCTGG 63237301 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 ||||| || | || ||||| || ||||| |||||||||||||||| || |||| Sbjct 63237302 CACAAGACGGACCAGAGCAAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGATCGAA 63237360 Query 310 AGT 312 ||| Sbjct 63237361 AGT 63237363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915192650944