Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq24 194 5e-47 seq3 187 8e-45 seq36 122 3e-25 seq5 114 4e-23 seq20 105 2e-20 seq39 77.0 1e-11 seq13 75.2 3e-11 >seq24 Length=40212183 Score = 194 bits (214), Expect = 5e-47 Identities = 186/236 (79%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||||||| |||| ||| | || |||||| ||||||| ||||| | ||||||||| Sbjct 26560383 ACTCATTTCAATGACAGGGCCTGGAAAGAGTCCTGTATTGTTATTTTTCATCACTACCTT 26560324 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| ||| ||| |||||| ||||| ||||| ||||||||||||||||||||||| |||| Sbjct 26560323 CCCCGGTCAGGAGTGGGTAGTTTGCACGCCT-CTGCCTTCCTTGGATGTGGTAGCTGTTT 26560265 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||| || ||||||| || ||| | |||||||||| Sbjct 26560264 CTCAGGCTCCCTCTCCGGAATCGAATTCTGATTCCCCACCACTCGTGGTCACCATGGTAG 26560205 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 ||| ||||||| || |||||||||| |||| || |||| ||| |||| Sbjct 26560204 GCCTGGGGACTACCATTGAGAGTTGATAGGCCAGACTTTCCAATGGGTCATTGCCG 26560149 >seq3 Length=74388519 Score = 187 bits (206), Expect = 8e-45 Identities = 185/235 (79%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 |||||||||||| | || || ||||| |||| |||||| | |||||||||||| Sbjct 26805890 ACTCATTCCAATGA--AGGCCTCAAAGAATCCTG-----GTATTT-TCGTCACTACCTCC 26805941 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 || || ||| ||||||||| || ||||||||||||| |||||||||||||||||||| Sbjct 26805942 CCAGATCAGGAGTGGGTAATT-GCACGCCTGCTGCCTTACTTGGATGTGGTAGCCGTTTT 26806000 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 ||||||||||||||| |||||||||||| ||||||| | |||| ||| |||| |||||| Sbjct 26806001 TCAGGCTCCCTCTCCAGAATCGAACCCTGATTCCCCATCACCCCTTGTCACCAAGGTAGG 26806060 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 | ||||||| |||||||||||| || |||||||| | |||||| Sbjct 26806061 CACGGCAACTACCAT---AAGTTGATAGGGAGGACGTTTGAATGTGTCGTCGCCG 26806112 >seq36 Length=80974255 Score = 122 bits (134), Expect = 3e-25 Identities = 130/169 (77%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||||||| |||||||| | || ||||||| ||| ||| ||||||| |||||| || Sbjct 27202783 ACTCATTGCAATTACAGGGCCTCAAAAGACTCCTCTAT---TATTTATCATCACTATGTC 27202727 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || | |||| ||||||||||| | |||||||| ||||||||| | ||||| |||| Sbjct 27202726 CCAGGA--GGGACTGGGTAATTTGTGTGCCTGCTGACTTCCTTGGGGGAGGTAGGGGTTT 27202669 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGA 170 |||| ||||||||| |||||| |||||| ||| || | ||| || || Sbjct 27202668 TTCAGTCTCCCTCTCTGGAATCAAACCCTGATTGCCTATCACCAGTCGA 27202620 Score = 98.7 bits (108), Expect = 3e-18 Identities = 83/102 (81%), Gaps = 4/102 (4%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAA----GGTACTATCAAAT 399 ||||||||||| |||||| ||| ||| |||||||| |||| || || || | |||| Sbjct 23310309 GCATGTATTAGTTCTAGACTTATCACAGTTATCCAAGTAGGAAAAGAGGAACCACCAAAG 23310368 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 441 ||| |||||||||||||||||||||| |||||||||||| Sbjct 23310369 GAACAATAACTGATTTAATGAGCCATTTATAGTTTCACTGTA 23310410 >seq5 Length=63240551 Score = 114 bits (126), Expect = 4e-23 Identities = 92/106 (87%), Gaps = 5/106 (5%) Strand=Plus/Minus Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTTATACTTA 458 ||| ||||||||||||| ||||||| ||||| |||||||| || | ||| ||||||| Sbjct 63236441 AACCATAACTGATTTAAGGAGCCATGTGCAGTGTCACTGTACCAGCTGTGC--ATACTTA 63236384 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||| |||||||||||||| |||||| ||| Sbjct 63236383 GACATGCATGGCTTAATCTTGGAGACAAGCATATG-CTACTGTCAG 63236339 >seq20 Length=45853754 Score = 105 bits (116), Expect = 2e-20 Identities = 87/101 (86%), Gaps = 5/101 (5%) Strand=Plus/Plus Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTTATACTTAGACAT 463 ||||||||||||||||||||| ||||||||||||| || ||| || | ||||||| Sbjct 1670481 TAACTGATTTAATGAGCCATTTGCAGTTTCACTGTGCCAGCCATGCGTA--CCTAGACAT 1670538 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| |||||||||||||||||||| |||||||||| Sbjct 1670539 GCATGGCTCAATCTTTGAGACAAGCATAT-TCTACTGGCAG 1670578 >seq39 Length=123855249 Score = 77.0 bits (84), Expect = 1e-11 Identities = 103/144 (72%), Gaps = 11/144 (8%) Strand=Plus/Minus Query 49 TTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGA- 107 |||||| |||| || | ||| ||| || ||||| || | ||||||||||||||||||| Sbjct 27705422 TTGTCATTACCATCCTGGGTCAGGAGTGAGTAATCTGTGAGCCTGCTGCCTTCCTTGGAA 27705363 Query 108 ---------TGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 |||||||| |||| |||||||||||| |||| || |||||| || Sbjct 27705362 ACTAGAAACAATGGTAGCCATTTCCCAGGCTCCCTCTTTAAAATCAAAGGCTAATT-CCT 27705304 Query 159 GTTACCCGTTGATACCATGGTAGG 182 | | ||| | ||||||||||| Sbjct 27705303 TTCATTCGTGGTCACCATGGTAGG 27705280 >seq13 Length=58133239 Score = 75.2 bits (82), Expect = 3e-11 Identities = 71/91 (78%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 71 GGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTC 130 ||| |||| ||||| | ||||| |||| | | | ||||||| | | ||||||||||||| Sbjct 39350864 GGAATGGGGAATTTACATGCCTGATGCCATTCCTAGATGTGGCATCTGTTTCTCAGGCTC 39350923 Query 131 CCTCTCCGGAATCGAACCCTAATTCCCCGTT 161 ||||||| ||| | | ||| ||||||| || Sbjct 39350924 CCTCTCCAGAACCATATCCTGATTCCCCTTT 39350954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510387871488