Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq50284 167 4e-39 seq21739 95.1 2e-17 seq19651 93.3 6e-17 seq39525 78.8 1e-12 >seq50284 Length=5487 Score = 167 bits (184), Expect = 4e-39 Identities = 170/218 (78%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 326 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 383 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 384 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 443 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 444 CCCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 503 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 504 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 541 >seq21739 Length=5502 Score = 95.1 bits (104), Expect = 2e-17 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 91 ATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACT 149 ||||||||||||| ||||| | ||||||| |||| |||| ||| | || Sbjct 194 ATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACA 135 Query 150 CGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCT 209 || ||| |||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 134 CGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCAGACATCTAAGGGCATCACAGACCT 75 Query 210 GTTATTGCCTCAAACTTCCGTGGC 233 ||||||| ||||| || ||||| Sbjct 74 GTTATTG-CTCAATCTCGGGTGGC 52 >seq19651 Length=88653 Score = 93.3 bits (102), Expect = 6e-17 Identities = 168/236 (71%), Gaps = 15/236 (6%) Strand=Plus/Minus Query 4 CAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTC 63 |||||| ||| ||| || ||| ||| ||||| ||||| | | |||||| |||||| |||| Sbjct 6808 CAAAGGACAGAGACTTAATCAGCGCAAGCTT-ATGACCCACACTTACTGGGAATT-CCTC 6751 Query 64 GTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCC 123 || | | || ||||||||| | |||||||||| || |||| | | ||| Sbjct 6750 ATTCATGGGGAATAATTGCAATCCCCGATCCCCATCATGAATGGGGATCAATGGGTTCCC 6691 Query 124 GG-ACCTGTCGGCCAAGGTGA--TAGACTCGT--TGAATACATCAGTGTAGCGCGCGTGC 178 | ||||| ||| ||| ||| | | | ||| |||||||| ||| ||| Sbjct 6690 TGCACCTG----CCAGTGTGGGGTAGGCGCATGCTGAGCCAGGCAGTGTAGTGCG--TGC 6637 Query 179 GGCCC-AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| || |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 6636 AGCCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCAGGTGGC 6582 >seq39525 Length=40014 Score = 78.8 bits (86), Expect = 1e-12 Identities = 62/73 (85%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||| ||||||| | || | ||||||||||||||| |||| ||||||||| ||| Sbjct 7031 TCAGTGTAGCACGCGTGCAGTCCCGGACATCTAAGGGCATCCCAGATCTGTTATTG-CTC 7089 Query 221 AAACTTCCGTGGC 233 || ||| ||||| Sbjct 7090 AATCTTGGGTGGC 7102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751412319050