Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq39525 150 3e-34 seq8290 147 4e-33 seq40703 89.7 9e-16 >seq39525 Length=40014 Score = 150 bits (166), Expect = 3e-34 Identities = 209/286 (73%), Gaps = 9/286 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTA--GAGT 95 |||| ||| ||| |||| || ||| ||| | | | |||||||| ||||||||| |||| Sbjct 7798 ATGCTCTTAGCTGAGTGTCCCTGGG-GCCTGAAGCATTTACTTTAAAAAAATTATAGAGT 7740 Query 96 GTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGC 152 |||||||||||||| ||| | |||| ||| |||||||| ||||||||| || Sbjct 7739 TTTCAAAGCAGGCCTGAGCTGCCTGGATACCACAGCTAGGAATAATGGAATAGGACA-GC 7681 Query 153 GGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212 ||||||||||||||||||| | | ||| | || ||||| | |||| | | |||| | Sbjct 7680 GGTTCTATTTTGTTGGTTTTTGGAACCAAGGCCATAATTAAGATGGATGGCCAGGGGCAT 7621 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||||| | |||||||||||||||||| ||||| || | |||||| Sbjct 7620 TTGTATTGCACCACTAGAGGTGAAATTCTTGGACCAGCGCAAGACAGACCAGAGCGAAAA 7561 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || ||||| |||||||||||||||| |||| ||||| || || Sbjct 7560 CATTTGCCAAGAATGTTTTCATTAATCA-AGAACAAAAGTCAGAGG 7516 >seq8290 Length=191809 Score = 147 bits (162), Expect = 4e-33 Identities = 194/266 (73%), Gaps = 5/266 (2%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCG-GGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| || |||| ||| | |||||||||||||||||||||||| Sbjct 20593 ATGCTCTTAGCTGAGTGTTCCATGGGACCCAAAGCATTTACTTTGAAAAAATTAGAGTGT 20652 Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| |||| | |||| ||| |||||||| ||||||||| | | Sbjct 20653 TCAAAGCAGGCCCAAGTTGCCTGGATACCACAGCTAGGAATAATGGAATAGGAC-CACTG 20711 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 |||| |||||||||||| | | || | |||||||| |||||| | |||| | Sbjct 20712 TTCTTTTTTGTTGGTTTTTGGAACTCAGGCCATGATTAAGAGGGATGGCGAGGGGCATTG 20771 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | | |||||||||||||||||| |||| || | | |||||| Sbjct 20772 GTATTGCACCGCTAGAGGTGAAATTCTTGGACCAGCACAAGATGGACCAGAGTGAAAGCA 20831 Query 275 TTCACCAAGGATGTTTTCATTAATCA 300 || ||||| |||||||||||||||| Sbjct 20832 TTTGCCAAGAATGTTTTCATTAATCA 20857 >seq40703 Length=75665 Score = 89.7 bits (98), Expect = 9e-16 Identities = 192/282 (68%), Gaps = 14/282 (5%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCC--AGGACTTTTACTTTGAAAAAATTAGAGTG 96 |||| ||| ||| |||| || || ||| | || ||| ||||||||||| |||||||| Sbjct 14613 ATGCTCTTAGCTGAGTGTCTCGTGGGGCCCAAAGAGTTT-ACTTTGAAAAAGTTAGAGTG 14555 Query 97 TTCAAAGCAGGCCTTTG---CTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCG 153 ||||||||||||| | | | |||| ||| |||||||| |||| ||| || Sbjct 14554 TTCAAAGCAGGCCCGAGCCACCTGGATACCACAGCTAGGAATAATGGAATCAGAC---CG 14498 Query 154 GTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 | || || |||||| || || | | ||||||| ||||| || ||| | | Sbjct 14497 G----GTTCTGCTGGTTTTCAGAACTGAGGCCGTGATTAAGAGGGACAGCTGGGCGCATT 14442 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 |||| | |||| ||||||||||||| | || | || | || ||||| Sbjct 14441 CATATTGCACCACTAGAGATGAAATTCTTGGACCCGTGCAACATGGACCAGAGCAAAAGC 14382 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 || ||||| |||||||||||||||| ||| |||||| || Sbjct 14381 ATTTGCCAAGAATGTTTTCATTAATCA-AGAATGAAAGTCAG 14341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914461708160