Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq24341 98.7 4e-18 seq26416 91.5 6e-16 seq13699 89.7 2e-15 seq27378 86.0 3e-14 seq6468 75.2 5e-11 >seq24341 Length=104210 Score = 98.7 bits (108), Expect = 4e-18 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | || || |||||| | | ||||| ||||||| Sbjct 62337 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGCGGATGGTAAACTCCATCTAAGGCTAAAT 62278 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| |||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 62277 AGTGGCACAAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 62218 Query 160 AGAGAGTTAAAA 171 ||||| | |||| Sbjct 62217 AGAGAATAAAAA 62206 >seq26416 Length=226618 Score = 91.5 bits (100), Expect = 6e-16 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | || || |||||| | | ||||| ||||||| Sbjct 50223 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTAAGGCTAAAT 50282 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || |||||| |||| ||||||| | | ||||| |||||| |||||| | Sbjct 50283 ACCAGCACGAGACCAATAGTCAACAAGTACCATAAGGGAAAGGAGAAAAGGACTTTGAAG 50342 Query 160 AGAGAGTTAAAAA 172 ||||||||||||| Sbjct 50343 AGAGAGTTAAAAA 50355 >seq13699 Length=153201 Score = 89.7 bits (98), Expect = 2e-15 Identities = 114/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||||||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 34472 GAGTTGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 34531 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||| |||| | | | || | ||||| ||||||| |||||| Sbjct 34532 ACCGGCATAAGACCAATAGTCAATACACACCGTAAGGGAAAGTTGAAAAGAACTTTG--- 34588 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 ||||||| || || ||||||| |||| | ||| || Sbjct 34589 -GAGAGTTCAAGAGGGCGTGAAACTGTTAAGAGGTAA 34624 >seq27378 Length=557180 Score = 86.0 bits (94), Expect = 3e-14 Identities = 118/164 (72%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| |||||||||||| | || ||| |||||| | | | ||| ||| || Sbjct 335570 GAGTTGGGTTGCTTGGGAATGCAGTCCAAAGCGGGTGGTAAACTCCATTTAAGGCTGAAC 335629 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||| | || | ||||| || |||| |||||| | Sbjct 335630 ACCGGCACGAGACCGATAGTCAACAAGCACCGTAAGGGAAAGTTGGAAAGAACTTTGAAG 335689 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC-GCTT 202 |||||||| || || | ||||| ||| | ||| ||| |||| Sbjct 335690 AGAGAGTTCAACAGGGCATGAAACCGTTAAGAGGACAGCAGCTT 335733 >seq6468 Length=378892 Score = 75.2 bits (82), Expect = 5e-11 Identities = 74/97 (76%), Gaps = 8/97 (8%) Strand=Plus/Minus Query 592 GCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGC 651 ||||| |||| ||||||||||||||||||||||||| || || ||| ||| ||||| Sbjct 219465 GCCTGGGCAGGGCAAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGAGGTCCTGACGTGC 219406 Query 652 AAATCGATCGTCAAATT--------TGGGTATAGGGG 680 |||| | |||||| || |||||||||||| Sbjct 219405 AAATAGGTCGTCAGGTTGTCCGACCTGGGTATAGGGG 219369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078269628500