Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq39525 183 5e-44 seq21739 113 7e-23 seq19651 95.1 2e-17 seq50284 91.5 2e-16 >seq39525 Length=40014 Score = 183 bits (202), Expect = 5e-44 Identities = 193/251 (77%), Gaps = 11/251 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| ||||||| | || | ||||||||||||||| |||| |||||||||| | Sbjct 7030 GTCAGTGTAGCACGCGTGCAGTCCCGGACATCTAAGGGCATCCCAGATCTGTTATTGC-T 7088 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC-------ACCAAC 127 ||| ||| | ||||| | |||| | |||||||||||||| | ||| Sbjct 7089 CAATCTTGGGT-GGCTGAATGCCAGTTGTCCCTCTAAGAAGTTGGGGGATTTTGACCGCT 7147 Query 128 CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 || | | || |||||| | | ||||| ||| | ||||||||||||||||| Sbjct 7148 CAGGGGTCACATAACTTGTTAGCATGCCAGAGTCTCATTCATCATCGGAATTAACCAGAC 7207 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 || |||| |||||||||||||| ||||||||||||||||||| ||||| |||||||||| Sbjct 7208 AAGTCAC--CACCAACTAAGAACAGCCATGCACCACCACCCATGGAATCGAGAAAGAGCT 7265 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 7266 ATCAATCTGTC 7276 >seq21739 Length=5502 Score = 113 bits (124), Expect = 7e-23 Identities = 87/101 (86%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || Sbjct 124 GTCAGTGTAGCGCGCGTGCAGCCCCAGACATCTAAGGGCATCACAGACCTGTTATTG-CT 66 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| | || |||||| | |||| | |||||||||||||| Sbjct 65 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAG 26 >seq19651 Length=88653 Score = 95.1 bits (104), Expect = 2e-17 Identities = 84/100 (84%), Gaps = 5/100 (5%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCC-AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||| ||| ||| |||| || |||||||||||||||||||||||||||||| ||| Sbjct 6651 CAGTGTAGTGCG--TGCAGCCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 6595 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 || | || |||||| | |||| | |||||||||||||| Sbjct 6594 AATC-TCAGGTGGCTGAATGCCACTTGTCCCTCTAAGAAG 6556 >seq50284 Length=5487 Score = 91.5 bits (100), Expect = 2e-16 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| Sbjct 484 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796177308270