Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq42222 313 4e-83 seq1174 125 1e-26 >seq42222 Length=5404 Score = 313 bits (346), Expect = 4e-83 Identities = 207/228 (91%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || |||||||||||| |||||||||||||||| Sbjct 5208 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGGAAAACTAACCTGTCTC 5149 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 5148 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 5089 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 5088 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 5029 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 5028 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 4981 Score = 105 bits (116), Expect = 1e-20 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 186 CTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAAT 245 |||||| ||||||||||||||||||||||||||||||||||| |||||| || | ||| Sbjct 4966 CTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAAC 4907 Query 246 TTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 4906 CCCAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 4859 >seq1174 Length=388960 Score = 125 bits (138), Expect = 1e-26 Identities = 145/194 (75%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 39 AGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGG 98 |||||||||| ||||||||||| || | | | | |||||| | |||||| ||| ||| Sbjct 126251 AGGGTAAAACCAACCTGTCTCAGCACAGCCGGATACTAGCTCAAGCTCCCTACTAGCGGG 126192 Query 99 TGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAG 158 ||| | | |||| |||| |||||||| ||| |||||| ||| ||| ||||| ||| Sbjct 126191 TGAGCGACCCAAAGCTTGGTGAATTCTGTTTCACAATGATA-GAAAAGCTAACATCAAAG 126133 Query 159 GATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218 ||||||| |||| || || | ||| || ||| ||| ||||||||||||| ||| Sbjct 126132 GATCAAACAGCAGGATCACTGTAAACACTGGGCCATCACCAGCCAGTTATCCCGGTGAAC 126073 Query 219 ACTTTTCTGGCACC 232 ||| ||||| |||| Sbjct 126072 ACTCTTCTGACACC 126059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853710755520