Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq8290 96.9 4e-18 seq39525 87.8 2e-15 >seq8290 Length=191809 Score = 96.9 bits (106), Expect = 4e-18 Identities = 129/176 (73%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| |||| | |||| | | Sbjct 20629 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAGTTGCCTGGATACCACAGCTA 20688 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| | ||||| |||||| ||||| | ||| | | | |||| Sbjct 20689 GGAATAATGGAATAGGAC-CACTGTTCTTTTTTGTTGGTTT-TTGGAACTCAGGCCATGA 20746 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | |||| | |||| | ||||| | | | |||||||||||||||| Sbjct 20747 TTAAGAGGGATGGCGAGGGGCATTGGTATTGCACCGCTAGAGGTGAAATTCTTGGA 20802 >seq39525 Length=40014 Score = 87.8 bits (96), Expect = 2e-15 Identities = 130/180 (72%), Gaps = 11/180 (6%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTT--CAAAGCAGGCCTTTGCTC---GAATACATTACC 67 |||||||| ||||||||| || ||| |||||||||||| ||| | |||| | | Sbjct 7763 TTTACTTTAAAAAAATTATAGAGTTTTCAAAGCAGGCCTGAGCTGCCTGGATACCACAGC 7704 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACC--GCCCGTA 125 |||||||| ||||||||| ||||||||||||||| ||||| | | ||| | || Sbjct 7703 TAGGAATAATGGAATAGGACA-GCGGTTCTATTTTGTTGGTTTTTGGAACCAAGGCC--- 7648 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || || || | |||| | | |||| | ||||| | | |||||||||||||||| Sbjct 7647 ATAATTAAGATGGATGGCCAGGGGCATTTGTATTGCACCACTAGAGGTGAAATTCTTGGA 7588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511599876800