Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq50284 185 2e-44 seq19651 114 2e-23 seq21739 104 4e-20 seq39525 95.1 2e-17 >seq50284 Length=5487 Score = 185 bits (204), Expect = 2e-44 Identities = 170/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| | Sbjct 541 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTG 482 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 || || || | | ||| ||||| ||| ||| || | | || | | ||||| Sbjct 481 GCTCAGCGTGTGCCTACCCTACGCCGGCAGGCGCGGGGAACCCGTTGAACCCCATTCGTG 422 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 ||||||| | | |||||||||||| | | | |||||||||| || |||||| ||| ||| Sbjct 421 ATGGGGATCGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTC 362 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||| |||||||||| |||||||||||||||| Sbjct 361 ATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTA 327 >seq19651 Length=88653 Score = 114 bits (126), Expect = 2e-23 Identities = 186/261 (71%), Gaps = 14/261 (5%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 6556 CTTCTTAGAGGGACAAGTGGCATTCAGCCACCTGA-GATTGAG-CAATAACAGGTCTGTG 6613 Query 131 ATGCCCTTAGATGTTCT-GGGCCGCACGCGCGCTACACTGACAG----AGCCAACGAGTT 185 |||||||||||||| || |||| ||| ||| |||||||| | | ||| || | Sbjct 6614 ATGCCCTTAGATGTCCTGGGGCTGCA--CGCACTACACTGCCTGGCTCAGCATGCGCCTA 6671 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | ||| |||| |||| || || | | | | | || || ||||||| | | Sbjct 6672 CCCCACACTGGC----AGGTGCAGGGAACCCATTGATCCCCATTCATGATGGGGATCGGG 6727 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||||| | | | || ||||||| || |||||| | | ||||| ||| ||| Sbjct 6728 GATTGCAATTATTCCCCATGAATGAGGAATTCCCAGTAAGTGTGGGTCATAAGCTTGCGC 6787 Query 306 TGATTACGTCCCTGCCCTTTG 326 |||||| ||| ||| |||||| Sbjct 6788 TGATTAAGTCTCTGTCCTTTG 6808 >seq21739 Length=5502 Score = 104 bits (114), Expect = 4e-20 Identities = 128/171 (75%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 26 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 83 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| |||| ||||||||||||||||||| | || || || | | Sbjct 84 ATGCCCTTAGATGTCTGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 143 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241 ||| ||||| ||| |||||| | | || | | ||||| ||||||| Sbjct 144 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGAT 194 >seq39525 Length=40014 Score = 95.1 bits (104), Expect = 2e-17 Identities = 126/171 (74%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | ||| ||||| ||||||||| |||| | Sbjct 7128 CTTCTTAGAGGGACAACTGGCATTCAGCC-ACCCAAGATTGAG-CAATAACAGATCTGGG 7071 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | || | ||||||| ||||||||||| | || || | | || Sbjct 7070 ATGCCCTTAGATGTCCGGGACTGCACGCGTGCTACACTGACTGGCTCAGCGTGGGCCTCC 7011 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241 ||| | || |||| ||||| || || || | | ||||| ||||||| Sbjct 7010 CCTATGTTGGCAGGTGCAGGTAACCTGGTGAACCCCATTCGTGATGGGGAT 6960 Score = 87.8 bits (96), Expect = 3e-15 Identities = 92/120 (77%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 209 GGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAAC 268 ||||| || || || | | ||||| ||||||| | | |||||||||||| | | | ||| Sbjct 6938 GGTAACCTGGTGAACCCCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCATGAAC 6879 Query 269 GAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||| || |||||| | | ||||| || || ||||||| |||||||| |||||| Sbjct 6878 GAGGAATTCCCAGTAAGTG-GGGTCATAGGCTTGCATTGATTAAATCCCTGCCTTTTGTA 6820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946435893760