Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq30640 349 1e-93 seq80478 255 2e-65 seq29482 206 9e-51 seq15845 149 2e-33 seq24232 143 9e-32 seq15817 96.9 1e-17 seq58 77.0 1e-11 >seq30640 Length=90659 Score = 349 bits (386), Expect = 1e-93 Identities = 274/341 (80%), Gaps = 45/341 (13%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | | ||||||||||| |||||| Sbjct 48093 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCATGCCAGACTAGAGTCAGGCTCAA 48034 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | Sbjct 48033 CAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCACTGG 47974 Query 357 ATAGTAGATAGG---------------------------------------------GAC 371 ||||||| |||| ||| Sbjct 47973 ATAGTAGGTAGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGNGAC 47914 Query 372 AGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 431 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 47913 AGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 47854 Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 |||||||||||||||||||||||||| | ||||||| | |||| ||||||||||||||| Sbjct 47853 ACCTTAAGAGAGTCATAGTTACTCCCACTGTTTACCTGTGCTTCATTGAATTTCTTCACT 47794 Query 492 TTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 |||||||||||||||||||||||||||||||| | ||||| Sbjct 47793 TTGACATTCAGAGCACTGGGCAGAAATCACATCCCATCAAC 47753 >seq80478 Length=18619 Score = 255 bits (282), Expect = 2e-65 Identities = 232/287 (81%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 || |||| | ||||||| ||||| | | | |||||||||||||| ||| ||||||| Sbjct 16414 TTGTACATTTATCAAGTCTCTTCACTGAC-CAGTCTAGAGTCAAGCTCCACAAGGTCTTC 16356 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 | |||| |||||| | ||||||| ||||||||| | ||| |||| |||||||||| ||| Sbjct 16355 TGTCCCTGCTGATCCTACCAAGCCTGTTCCCTTGCCAGTGATTTCACTAGATAGTACATA 16296 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 ||||||| | | ||| || | |||||||||| |||| ||||| ||| || ||||| Sbjct 16295 -GGACAGT-GAACTCTTATTCAACCATTCATGCATATCACCAATTAAGTGATGAAGCATT 16238 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 |||||||||||||||||||||||| ||| || | |||||| |||| |||||||||| Sbjct 16237 TGGCTACCTTAAGAGAGTCATAGTCACTGCC-ACATTTACCTCTGCTTCATTGAATTTCT 16179 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||| |||||||||||||||| ||||||||||| |||||| ||||||| Sbjct 16178 TCAGTTTGACATTCAGAGCAGTGGGCAGAAATGACATTGTGTCAACA 16132 >seq29482 Length=4685 Score = 206 bits (228), Expect = 9e-51 Identities = 119/122 (98%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 368 GGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTT 427 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2810 GGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTT 2751 Query 428 GGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTT 487 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2750 GGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTT 2691 Query 488 CA 489 || Sbjct 2690 CA 2689 >seq15845 Length=212793 Score = 149 bits (164), Expect = 2e-33 Identities = 204/279 (73%), Gaps = 17/279 (6%) Strand=Plus/Minus Query 237 CTCCCACTTATTC-TACACCTCTCAAGTCATT-TCACAAAGTCGGACTAGAGTCAAGCTC 294 |||||||||| || |||| | || ||||| | ||| || || | ||| | || Sbjct 181664 CTCCCACTTAATCCTACAGGTGTCTGTTCATTGTGACA-----GGTTTACAATCATGTTC 181610 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 ||||| ||||||| ||| | | || |||||| | ||| |||||||||| |||| Sbjct 181609 AACAG--TCTTCTTCACCCACAGCTTTTGCCAAGTCA-TTCTCTTGGCTGTGATTTC--- 181556 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 ||| ||| | || || ||||| || || |||||||||||| | || ||||||||| Sbjct 181555 --ATAATAGGCAAAGATGGTAGGAATATCATTCATCCATTCATGCCCATCCCTAATTAGA 181498 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 || || ||| ||||||||||||||||| | |||||||| || | |||||| | |||| Sbjct 181497 TGGTGAAGCACTTGGCTACCTTAAGAGAATTATAGTTACACCATCAATTTACCTGAGCTT 181438 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCA 513 |||||||||||||| ||||| |||| ||||| ||| Sbjct 181437 CAGTGAATTTCTTCACTATGACA--CAGAACACTGAGCA 181401 >seq24232 Length=221542 Score = 143 bits (158), Expect = 9e-32 Identities = 163/212 (77%), Gaps = 10/212 (5%) Strand=Plus/Minus Query 311 CCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG-ATAGTAGATAGGG 369 || |||||||| ||||||| ||| ||||| ||||| |||| ||| ||| || |||| Sbjct 215054 CCTGCTGATTCTGCCAAGCTAGTTGCCTTGACTGTG-TTTCACTAATATACCAGGTAGGT 214996 Query 370 ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 429 || ||||||||||| ||| |||||| | ||||| |||||||| | | ||||||| Sbjct 214995 ACTGTGGGAATCTC----ATCTATTCATAGACATCACTGTTTAGATGATGGGACATTTGG 214940 Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489 ||||||| | ||||||| |||||||| | ||| | || ||||||||||||| Sbjct 214939 CTACCTT--GGCAGTCATAATTACTCCCTATAAT-ACCTTCATTTCATTGAATTTCTTCA 214883 Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 ||||||||||||||| |||||||||||| || Sbjct 214882 CTTTGACATTCAGAG-TCTGGGCAGAAATTAC 214852 >seq15817 Length=578693 Score = 96.9 bits (106), Expect = 1e-17 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 |||||||||||||||||||||||||| | ||||||| || || |||||| |||||||| Sbjct 204547 ACCTTAAGAGAGTCATAGTTACTCCCACTGTTTACCTGCATTTCATTGAATATCTTCACT 204488 Query 492 TTGACATTCAGAGCACTG 509 |||||||||| | ||||| Sbjct 204487 TTGACATTCACAACACTG 204470 >seq58 Length=775442 Score = 77.0 bits (84), Expect = 1e-11 Identities = 69/87 (79%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 27 TCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCC 86 ||||| | || |||| | |||||||||||||| |||| ||| |||| ||| | |||| Sbjct 654584 TCTGTGCCCCCTGAGCTCACCTTAGGACACCTGTGTTACCATTTGACAGGTGTACTGCCC 654525 Query 87 CAGCCAAACTCCCCACCTGACAATGTC 113 ||| || |||||||||||| || |||| Sbjct 654524 CAGTCAGACTCCCCACCTGGCACTGTC 654498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633880884160