Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq39525 237 5e-60 seq3805 143 8e-32 seq15221 123 8e-26 seq675 104 7e-20 seq8290 80.6 8e-13 >seq39525 Length=40014 Score = 237 bits (262), Expect = 5e-60 Identities = 197/237 (83%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || |||||| ||| | | ||||| | ||||| |||| Sbjct 7995 ACTCATTCCAATTACAGGGCCTTGAAAGAGTCCTCTGTTGTTATTTTTCATCACTGCCTC 8054 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||||| |||| | ||||| |||||| | ||||||||||||||||||||||||||||||| Sbjct 8055 CCCGTTTCGGTAGTGGGTGATTTGCACAACTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 8114 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||| ||||| ||||||| ||||||||| ||| || | |||||||||| Sbjct 8115 CTCAGGCTCCCTCTCTGGAATTGAACCCTGATTCCCCGTCACCTGTGGTCACCATGGTAG 8174 Query 182 GCCACTAT-CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 | ||| | |||||||||||||||||||||||||| || ||||| | |||||||| Sbjct 8175 G-CACGGTGACTACCATCGAAAGTTGATAGGGCAGATGTTCGAATGGATCATCGCCG 8230 >seq3805 Length=314007 Score = 143 bits (158), Expect = 8e-32 Identities = 137/169 (81%), Gaps = 11/169 (7%) Strand=Plus/Minus Query 339 TTTTAG-CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT----- 392 |||||| |||||||||||||||||||| ||| |||||||| |||| | | | | Sbjct 259414 TTTTAGGCATGTATTAGCTCTAGAATTGCCATAGTTATCCAAGTAGGAGAGGAGTGAGCA 259355 Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCT 450 | |||| ||| |||||||||||||| |||||||| | ||||||||||| || || Sbjct 259354 ACCAAAGGAACCATAACTGATTTAATAAGCCATTCTCTGTTTCACTGTACCAGCCATG-- 259297 Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 499 | ||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 259296 TGTACCTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACT 259249 >seq15221 Length=100103 Score = 123 bits (136), Expect = 8e-26 Identities = 155/209 (74%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 9 TCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTG 67 |||||||||| | || || ||||| |||| | || ||| ||||||| || |||||| | Sbjct 58571 TCCAATTACATGGCCTCAGAAGAGTCCTGCGTT-GTCTTTTTTGTCACCACGTCCCCGGG 58513 Query 68 TCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGG 127 |||||| |||||||||||| | ||||||||| || |||||||| | | ||| ||| Sbjct 58512 TCGGGAATGGGTAATTTGCACACCTGCTGCCCTCATTGGATGTCACAAACATTT-ACAGA 58454 Query 128 CTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACT 187 ||||||| | ||||| ||||||| || ||| || ||| | | |||||| ||||| Sbjct 58453 CTCCCTCCCTGGAATTGAACCCTGATCCCCTGTCCCCCCTGGCCACCATGTTAGGCTCAG 58394 Query 188 ATCCTACCATCGAAAGTTGATAGGGCAGA 216 | |||||| | |||| |||||| || Sbjct 58393 AGTCTACCACTGCGTGTTGGTAGGGCTGA 58365 >seq675 Length=714446 Score = 104 bits (114), Expect = 7e-20 Identities = 124/166 (75%), Gaps = 7/166 (4%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAA 397 ||||||||| ||||||||| ||||||| | |||| |||| | | | | | ||| Sbjct 202904 AGCATGTATCAGCTCTAGAGTTACCACAGCAGTCCAAGTAGGAGAGGAGCAAGCCACCAA 202963 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTT 457 | ||| |||||||||||||||| ||||| |||||||| ||| | ||||| Sbjct 202964 AGGAACCATAACTGATTTAATGACACATTCACAGTTTCA-TGTGCCACCCACGCATACTG 203022 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 |||||| |||||||| ||| ||||||||||||| || ||| ||||| Sbjct 203023 AGACATCCATGGCTTTATCCTTGAGACAAGCATGTG-CTAGTGGCA 203067 >seq8290 Length=191809 Score = 80.6 bits (88), Expect = 8e-13 Identities = 78/99 (79%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | | |||||||| ||||||| ||||| | ||||||| | Sbjct 20398 ACTCATTCCAATTACAGGGTCTCAAAAGAGTCCTGTATTGTTATTTTTCATCACTACTTT 20339 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTT 100 || ||| ||| |||||||||| | | ||||||||||| Sbjct 20338 TCCAGGTCAGGAGTGGGTAATTTACACACCTGCTGCCTT 20300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509181560320