Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4223 149 5e-31 seq56286 111 1e-19 seq1414 98.7 8e-16 >seq4223 Length=550205 Score = 149 bits (164), Expect = 5e-31 Identities = 552/847 (65%), Gaps = 25/847 (3%) Strand=Plus/Plus Query 61084 GATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGAT 61143 |||||||||| ||||| || || ||| |||||||| ||| | | |||||||| | | Sbjct 266103 GATATTTGGCAGATGTATAAGAAAATGGAGGCTTCCTTTTGGGCAGCTGAGGAGGTGG-T 266161 Query 61144 TTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG-GTGAACAAC-ATTTCATTA 61201 | || || |||| | ||||||| || |||| | | | | |||| || Sbjct 266162 CTCTCTAAGAACATTCAGCACTGGGAAGCCCTA--GAGCTTGAGGAGAGGTATTTTATAT 266219 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 ||||| |||| |||||||| | || || || || ||||| || || |||| | Sbjct 266220 CTCATGTTCTGGCTTTCTTTGCAACAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGC 266279 Query 61262 G-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 | ||| || || || || || | | || || || |||||||| | |||||| |||||| Sbjct 266280 GGTTTAGC-CAAGAAGTTCAGATTACAGAAGCCCGCTGTTTCTATGACTTCCAAATTGCC 266338 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380 ||||| || | | || || ||||| ||| | ||||| || || ||||| | ||| Sbjct 266339 ATGGAAAACATACGTTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAGGACTCC 266398 Query 61381 GCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCG 61440 ||| || || | ||||||||||| |||| ||| || || ||| ||| || Sbjct 266399 AAAGAAAGTAAATTTCTCTTCAATGCCATTGAGATGATGCCTTGTGTAAAGAAGAAGGCA 266458 Query 61441 GATTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGG 61498 |||||||| || |||||| || |||| |||||| | ||| ||||| || | | Sbjct 266459 GATTGGGCTTTGCCTTGGAT-TGGAG-ACAAAGAGGCTACCTGTGGAGAACGTGTGGTAG 266516 Query 61499 CATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGA 61558 | ||||| || || || | | ||| ||| || ||||| || || ||| | | Sbjct 266517 CCTTTGCTACCGTGGAAGG---AATCTTC--TGGTTCTTTTGCATTGATATTCTGGCTCA 266571 Query 61559 AGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGAG 61617 |||||| ||||| |||| ||||| || || ||||| | || || || | || Sbjct 266572 AGAAACAAGGACTCGTGCCTGGTCTCACATTTTCCAATGAACTTATTAGCA-GAGATATA 266630 Query 61618 GGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCG 61677 || | || ||||| ||||| || | ||||||| | ||| | | || | | Sbjct 266631 GGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAAC---ACCTGCTACACAAACCTTTG 266687 Query 61678 GAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACT 61737 ||| || | ||| || || | | | || | || ||||||||||| || || Sbjct 266688 GAGCAGAGAGTGAAAGAAATCATCATCAATTCTGTTAGGATAGAACAGGAATTCCTCACA 266747 Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797 || || ||||| || |||| || |||||||| ||||| ||||||||||||| Sbjct 266748 GAGGCCTTGCCAGTAAAGCTCACTGGGGTGAATTGTACCTTAATGAAGCAGTATATTGAA 266807 Query 61798 TTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTAT--GAAGCGGATCTATAATACGAAAA 61855 ||||| || ||| | || || | || ||| | | | | | | || | || ||| Sbjct 266808 TTTGTGGCAGACAGACTTATGCTGGAGCTGGATTTTAGCAAGGTTTTTAGAGTA--GAAA 266865 Query 61856 ACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAAC 61915 | || ||||| || ||||| | || || ||||| | ||||| || || || ||||| Sbjct 266866 ATCCTTTTGACTTTATGGAGACTATCTCCCTGGAAGTGAAGACTAACTTCTTTGAGAAGA 266925 Query 61916 GTGTAGG 61922 | ||||| Sbjct 266926 GAGTAGG 266932 >seq56286 Length=35121 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| |||||||| || ||||| || || |||| ||||| || Sbjct 17699 GGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTG 17758 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||||||||| || || ||||| || Sbjct 17759 GTTGCTCTTCCGATTACAGGAATCTTTGTAAAGCATGTACGGGGTACCTGTCTCTGTCTG 17818 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 17819 AGACTCAATGATGGCATACCAAAG 17842 >seq1414 Length=619926 Score = 98.7 bits (108), Expect = 8e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 505418 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 505477 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 505478 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 505524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397177124808800