Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq60910 176 1e-39 >seq60910 Length=5705 Score = 176 bits (194), Expect = 1e-39 Identities = 263/368 (71%), Gaps = 4/368 (1%) Strand=Plus/Plus Query 2493 CGACTACCTTGAAGAATTGGTTAACAAATACCCAATCATCACTATCGAAGATGGTATGGA 2552 ||||||||| | | ||| |||| | ||| ||| || | |||||||| || ||| | Sbjct 2493 CGACTACCTGGCGAACCTGGCCGACAAGTTCCCGATCGTCTCGATCGAAGACGGCATGCA 2552 Query 2553 CGAAAACGACTGGGACGGTTGGAAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATT 2612 ||||| |||||||| ||| ||||| | || || || || || || || ||| | Sbjct 2553 CGAAAGCGACTGGGCCGGCTGGAAGACACTGACCGACAAGCTCGGCAAGAAGGTGCAACT 2612 Query 2613 GGTTGGTGACGACTTCTTCGTAACTAACACTGCTTACCTTGAAA-AAGGTATTGCAGAAC 2671 ||| || |||||| | ||||| || ||||| || | | |||| |||| |||| |||| Sbjct 2613 GGTGGGCGACGACCTGTTCGTCACCAACAC-GCGCATCCTGAAGGAAGGCATTG-AGAAG 2670 Query 2672 A-CGCTGCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTT 2730 | ||| ||||| ||||| ||||| | ||||| |||||||| |||| ||||| || Sbjct 2671 GGCATTGCCAACTCGATCCTGATCAAGATCAACCAGATCGGTACGCTGACGGAAACCTTC 2730 Query 2731 GACGCTATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGT 2790 | || |||||||||||||| || || ||||| || || | || ||||| || || Sbjct 2731 GCGGCGATCGAAATGGCGAAGCGTGCCGGCTACACGGCTGTGATCTCGCACCGCTCGGGC 2790 Query 2791 GAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAG 2850 ||||| |||||||| || || || || || ||||| | ||||| ||||| || ||| Sbjct 2791 GAAACCGAAGATTCGACGATTGCGGACATCGCAGTCGGCCTGAACGCCGGTCAGATCAAG 2850 Query 2851 ACAGGTTC 2858 || ||||| Sbjct 2851 ACGGGTTC 2858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155888922039480