Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq13280 105 3e-20 seq33536 102 3e-19 seq5134 87.8 7e-15 seq10633 86.0 3e-14 seq20892 84.2 9e-14 seq73 84.2 9e-14 seq35439 80.6 1e-12 seq15278 77.0 1e-11 >seq13280 Length=50216 Score = 105 bits (116), Expect = 3e-20 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | | ||| ||||||| Sbjct 50203 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATTTAAGGCTAAAT 50144 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||| ||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 50143 ACCGGCACAAGACTGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGGACTTTGAAG 50084 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || ||||||| Sbjct 50083 AGAGAGTTCAAGAGGGCGTGAAA 50061 >seq33536 Length=4287 Score = 102 bits (112), Expect = 3e-19 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 ||| | |||| ||||||||||||| | || |||| |||||| | | ||||| |||||||| Sbjct 704 AGTTGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAATA 763 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160 ||| |||||| |||| | | || || | ||||| ||||||| |||||| | | Sbjct 764 CCGGCACGAGACCAATAGTCAATACATACCGTAAGGGAAAGTTGAAAAGAACTTTGAAGA 823 Query 161 GAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 ||||||| || || |||||| |||| | ||| || Sbjct 824 GAGAGTTCAAGAGGGTGTGAAACTGTTAAGAGGTAA 859 >seq5134 Length=116349 Score = 87.8 bits (96), Expect = 7e-15 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | || || |||||| | | ||||| ||||||| Sbjct 51718 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTAAGGCTAAAT 51777 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || |||||| |||| ||||||| | | ||||| |||||| |||||| | Sbjct 51778 ACCAGCACGAGACCAATAGTCAACAAGTACCATAAGGGAAAGTAGAAAAGGACTTTGAAG 51837 Query 160 AGAGAGTTAAAAA 172 |||||||| |||| Sbjct 51838 AGAGAGTTCAAAA 51850 >seq10633 Length=64552 Score = 86.0 bits (94), Expect = 3e-14 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC--TAA 97 ||||| || | ||||||||||||| | || ||| |||||| | | ||||| || ||| Sbjct 11578 GAGTCAGGTAGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTATAA 11519 Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGG 157 ||| |||| ||||||| || ||||||| || | ||||| ||||||| |||||| Sbjct 11518 ATACTGGCACAAGACCGACAGTCAACAAGTACCGTAAAGGAAAGTTGAAAAGAACTTTGA 11459 Query 158 AAAGAGAGTTAAAA 171 | ||||| | |||| Sbjct 11458 AGAGAGAATAAAAA 11445 >seq20892 Length=24776 Score = 84.2 bits (92), Expect = 9e-14 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 592 GCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGC 651 ||||| |||| |||||||||||||||||||||||||| | |||||| ||| |||| Sbjct 7245 GCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCATAGCGGTCCTGATGTGC 7304 Query 652 AAATCGATCGTCAAATTTGGGTATAGGGG 680 |||||| | ||| | |||||||||||| Sbjct 7305 AAATCGGTTGTCTGACCTGGGTATAGGGG 7333 >seq73 Length=530958 Score = 84.2 bits (92), Expect = 9e-14 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| |||| |||||| | || | || |||||| | | ||||| | ||||| Sbjct 466416 GAGTCAGGTTGCTTGGAAATGCAACCAAAAGTAGGTGGTAAACTCCATCTAAGGTTAAAT 466357 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 466356 ACTGGCATGAGACCGATAGTTAACAAGTACTCTAAGAGAAAGTTGAAAAGAACTTTGAAG 466297 Query 160 AGAGAGTTAAA 170 | |||||| || Sbjct 466296 ACAGAGTTCAA 466286 >seq35439 Length=2652 Score = 80.6 bits (88), Expect = 1e-12 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 97 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGGGGTAAACTCCATCTAAGGCTAAAT 38 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTA 128 | ||| ||||||||||| ||||||| Sbjct 37 ACCGGCACGAGACCGATAGTCAACAAGTA 9 >seq15278 Length=42030 Score = 77.0 bits (84), Expect = 1e-11 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||| | ||||||||||||||||||| | |||||||||||||||| ||| |||||| Sbjct 26580 GGACCCAAGAGATGGTGAACTATGCCTGGGGAAGGTGAAGCCAGAGGAAGCTCAGGTGGA 26521 Query 629 GG 630 || Sbjct 26520 GG 26519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078010040600