Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq11178 129 1e-27 seq7612 78.8 2e-12 seq5854 77.0 6e-12 >seq11178 Length=62137 Score = 129 bits (142), Expect = 1e-27 Identities = 147/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 39 AGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGG 98 |||||||||| ||||||||||| || | | | | |||||| | ||||| ||| ||| Sbjct 57039 AGGGTAAAACCAACCTGTCTCAGCACAGCCGGATACTAGCTCAAGCCCCCTACTAGCGGG 57098 Query 99 TGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA-TCGAA 157 ||| ||| |||| |||| |||| ||||||| | |||||| ||| ||| |||| || || Sbjct 57099 TGAGCAACCCAAAGCTTGGTGAATACTGCTTCAGAATGATA-GAAAAGCTGACATTCAAA 57157 Query 158 GGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 217 |||||||| |||| ||||| | | | || ||| ||| ||||||||||||| ||| Sbjct 57158 GGATCAAACAGCAGGATCGCTGTAATCACTGGGCCATCACCAGCCAGTTATCCCAGTGAA 57217 Query 218 AACTTTTCTGGCACC 232 ||| ||||| |||| Sbjct 57218 CACTCTTCTGACACC 57232 >seq7612 Length=87096 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || ||| |||| ||||| ||||| Sbjct 86321 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACC 86262 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| |||| | | | ||| || ||||||||||||| | |||| | Sbjct 86261 CTTGGGACC---TTCTCCAGCCCCAGGATGTGACGAGCCGACATCGAGGTGCCAAACCCC 86205 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||| | ||||| | | |||| |||||||| | ||| ||||| Sbjct 86204 TCCGTCGATATGAGCTCTTGGGAGGGATCAGCCTGTTATCCCCGGAGTACCTTTT 86150 >seq5854 Length=106181 Score = 77.0 bits (84), Expect = 6e-12 Identities = 137/193 (71%), Gaps = 13/193 (7%) Strand=Plus/Minus Query 38 TAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGG 97 |||||||||||| | | ||| | || |||| | |||||||| | | | | |||||| Sbjct 55795 TAGGGTAAAACTGTCTTACCTCCA-ATGGCCTAATCTCAGCTCACATCCTC-AGTAGTGG 55738 Query 98 GTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAG-GAAGAGCCGACATCGA 156 | ||||||| | | ||| ||| |||||||| | || ||||| || ||||| | Sbjct 55737 GGGAACAATGCGGCACTTGATGAAGTCTGCTTC------ACAGCGAAGAACCAACATCTA 55684 Query 157 AG-GATCAAAAA-GCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 | | | ||| | || | ||||||||| ||||||| ||||| || ||||||||||| Sbjct 55683 AAAGCTGAAAGGTGGAA--TTGCTATGAACTCTTGGCTACCACATTCCGGTTATCCCTGT 55626 Query 215 GGTAACTTTTCTG 227 | ||| |||||| Sbjct 55625 GATAATGTTTCTG 55613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853607356032