Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq7612 134 4e-29 >seq7612 Length=87096 Score = 134 bits (148), Expect = 4e-29 Identities = 114/139 (82%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| | || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 67494 CTGAGAGGAAGGTCCCCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 67553 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||| ||||||||| |||||| | | || |||| |||| | | |||||| ||||| Sbjct 67554 CAGTGAGGAATATTGGTCAATGGACGAGAGTCTGAACCAGCCAAGTAGCGTGAAGGATGA 67613 Query 340 A-GGCCTTCGGGTCGTAAA 357 | | ||| |||| ||||| Sbjct 67614 ATGCCCTATGGGTTGTAAA 67632 Score = 118 bits (130), Expect = 3e-24 Identities = 175/246 (71%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACC 81 || ||||| ||||||||||||| ||| ||||| || |||| ||||| | | Sbjct 69886 GACCGGCGCACGGGTGAGTAACACGTATCCAACCTACCTATCACACGGGGATAGCTCTTC 69945 Query 82 GAAAG--GTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCT 139 ||||| | || |||||| ||| ||||| ||||||| |||| | || ||| |||| | Sbjct 69946 GAAAGAAGGAT--TAATACCTGATGATATAGTTTTATCTCATGATTTAACTATTAAAGAT 70003 Query 140 CCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAA 199 |||| ||| | ||| ||||| ||||||| ||||||||||| ||||| Sbjct 70004 TTATCGGTGATAGATGGGGATGCGCTCCATTAGACAGTTGGTGAGGTAACGGCTCACCAA 70063 Query 200 GGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTC 259 | ||||| ||| | |||||||| | || |||||||||||||||||||||||| Sbjct 70064 ATCTACGATGGATAGGGGTTCTGAGAGGAAGGTCCCCCACATTGGAACTGAGACACGGTC 70123 Query 260 CAAACT 265 |||||| Sbjct 70124 CAAACT 70129 Score = 80.6 bits (88), Expect = 8e-13 Identities = 69/84 (82%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 417 GCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAG 476 ||||||||||||||||||||| ||| | ||||||||||||| ||| | ||| ||||| Sbjct 65138 GCCAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTA-TTGGGTTTAAAG 65196 Query 477 GGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||||| || | |||||| Sbjct 65197 GGTGCGTAGGCGGACTGGTAAGTC 65220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1496210646528