Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq7612 389 1e-105 seq48552 129 2e-27 >seq7612 Length=87096 Score = 389 bits (430), Expect = 1e-105 Identities = 360/448 (80%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCG-ACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| || |||||| | |||| | || |||||| |||||||||||||||||||| | Sbjct 78986 CGAGTCTTAATAGGGCGTATAGTCAGTAGGAGTAGACGCGAAACCAAGTGATCTACCCTT 79045 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 || |||| ||||||| |||||||| ||||||| ||||||| | | |||||||||| Sbjct 79046 GGTCAGGTTGAAGGTTAGGTAACACTAACTGGAGGACCGAACCGATAAGTGTTGAAAAAC 79105 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 | |||||| ||| |||||||||||||||||||| |||||||||| |||||| || ||| Sbjct 79106 TTTCGGATGAACTGAGGGTAGGGGTGAAAGGCTAATCAAACTTGGAGATAGCTCGTACTC 79165 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGT-ATCACCATCGGG-GGTAGAGC-ACTGTTA 237 |||||| |||||||| |||| | | || || | | | |||||||| |||| || Sbjct 79166 CCCGAAATGCATTTAGGTGCAGCCTTATTTGATTACTAATGTGAGGTAGAGCGACTGATA 79225 Query 238 TG--GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTT 295 | || |||| ||| || || ||| | | |||||||||||||||||| |||| Sbjct 79226 AGATGCGAGGGCTTCACCGCC---TATCAAGTCTTGACAAACTCCGAATGCGCATTAGTT 79282 Query 296 TTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGA 355 | | ||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 79283 T-AGAATAGGAGTGAGGGCATGGGTGCTAAGGTCCATGTCCGAGAGGAGAAGAATCCGGA 79341 Query 356 CTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGA 415 | | ||||||||| ||| |||| | |||||||| ||||||||||||| ||||||||||| Sbjct 79342 CCACCAGCTAAGGTCCCCAAATAATTGCTAAGTTGAACTAACGAAGTCAGATTGCTAAGA 79401 Query 416 CAGCTAGGATGTTGGCTTGGAAGCAGCC 443 |||||||||||||||||||||||||||| Sbjct 79402 CAGCTAGGATGTTGGCTTGGAAGCAGCC 79429 >seq48552 Length=620 Score = 129 bits (142), Expect = 2e-27 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 345 AAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCT 404 |||| || ||| |||||||||| ||| ||||| | ||||| | || || || Sbjct 6 AAGAGCCCAGACCGTCAGCTAAGGTCCCAAAATGTATGTTAAGTGGTA--AAGGATGTGG 63 Query 405 GATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAA 464 |||||| ||||| | ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 64 GATTGCATAGACAACCAGGATGTTGGCTTAGAAGCAGCCATTCATTTAAAGAGTGCGTAA 123 Query 465 CAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAA 524 |||||||| |||||| || ||| || || |||| | || |||||||| Sbjct 124 TAGCTCACTGGTCGAGTGATCCTGCGCCGAAGATTTCCGGGGCTAAAACATACTACCGAA 183 Query 525 GCAGTGGGATCATTTATATGATCGGTAGGGGAGC 558 || || |||| ||||||| ||||| ||||| Sbjct 184 GCTACGGCATCA--AATATGATGGGTAGAGGAGC 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1688032524288