Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq7636 444 2e-122 seq5032 271 2e-70 seq325 187 8e-45 seq10814 143 9e-32 seq11531 75.2 4e-11 >seq7636 Length=87160 Score = 444 bits (492), Expect = 2e-122 Identities = 279/298 (94%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 46570 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 46511 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || | Sbjct 46510 CAGGGTCTTCTTTCCCCACTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCACTGG 46451 Query 357 ATAGTAGATAGGGACAGTGG-GAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 ||||||| |||| ||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 46450 ATAGTAGGTAGG-ACAGTGGAGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGAT 46392 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 46391 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCTGCCGTTTACCCGCGCTTC 46332 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 46331 ATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 46274 >seq5032 Length=117940 Score = 271 bits (300), Expect = 2e-70 Identities = 234/287 (82%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 || |||| | ||||||| ||||| | | | |||||||||||||| | | ||||||| Sbjct 6977 TTGTACATTTATCAAGTCTCTTCACTGAC-CAGTCTAGAGTCAAGCTCCATAAGGTCTTC 7035 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 | |||| |||||||| |||||| ||||||||| | ||| |||| ||||||||||| || Sbjct 7036 TGTCCCTGCTGATTCTACCAAGCGTGTTCCCTTGCCAGTGATTTCACTAGATAGTAGGTA 7095 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||| ||| || | |||||||||| ||||| ||||| ||| || ||||| Sbjct 7096 GGGACAGTGGGACTCTTATTCAACCATTCATGCATGTCACCAATTAAGTGATGAAGCATT 7155 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 || |||||||||||||||||||||||| || | |||||| |||| |||||||||| Sbjct 7156 TGATTACCTTAAGAGAGTCATAGTTACTGCC-ACATTTACCTCTGCTTCATTGAATTTCT 7214 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||| |||||||||||||||| ||||||||||| |||||| ||||||| Sbjct 7215 TCAGTTTGACATTCAGAGCAGTGGGCAGAAATGACATTGTGTCAACA 7261 >seq325 Length=373959 Score = 187 bits (206), Expect = 8e-45 Identities = 183/234 (78%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 287 TCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTG 346 ||| | ||||||| ||||||| ||| | |||| |||||| | ||| |||||||||| Sbjct 313036 TCATGTTCAACAG--TCTTCTTCACCCACAGATTTTGCCAAGTCA-TTCTCTTGGCTGTG 312980 Query 347 GTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCAC 406 |||| ||||| ||| || ||| || ||||| || || |||||||||||| | || | Sbjct 312979 ATTTCATCAGATAATAGGTAAAGACGGTAGGAATATCATTCATCCATTCATGCACATCCC 312920 Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 |||||||||| |||||| ||||||||||||||||| ||| |||||| || | ||||| Sbjct 312919 TAATTAGATGGTGAGGCACTTGGCTACCTTAAGAGAATCACAGTTACACCATCAATTTAC 312860 Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 | | |||| |||||||||| ||| ||||| ||||| ||||| ||| |||||| Sbjct 312859 CTGAGCTTCAGTGAATTTCTTTACTATGACACTCAGAACACTGAGCAAAAATCA 312806 >seq10814 Length=128508 Score = 143 bits (158), Expect = 9e-32 Identities = 159/207 (77%), Gaps = 9/207 (4%) Strand=Plus/Minus Query 316 TGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG-ATAGTAGATAGGGACAGT 374 |||||| ||||||| ||| ||||| || || |||| ||| ||| | |||| || || Sbjct 330 TGATTCTGCCAAGCTAGTTGCCTTGACTATG-TTTCACTAATATACCGGGTAGGTACTGT 272 Query 375 GGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACC 434 ||||||||| ||| |||||| | ||||| |||||||| | | |||||||||||| Sbjct 271 GGGAATCTC----ATCTATTCATAGACATCACTGTTTAGATGATGGGACATTTGGCTACC 216 Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 || || ||||||| |||||||| | ||| | || |||||||||||||||||| Sbjct 215 TT--GACAGTCATAATTACTCCCTATAAT-ACCTTCATTTCATTGAATTTCTTCACTTTG 159 Query 495 ACATTCAGAGCACTGGGCAGAAATCAC 521 |||||||||| ||||||||||||| || Sbjct 158 ACATTCAGAGTACTGGGCAGAAATTAC 132 >seq11531 Length=59410 Score = 75.2 bits (82), Expect = 4e-11 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 462 TTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 ||||| | | ||| |||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 7910 TTTACTCACACTTCATTGAATTTCTGCACTTTGCCATTCAGAGCACTGGGCAGAAATCA 7968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633682992256