Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq7708 241 4e-61 seq31112 187 8e-45 seq294 179 1e-42 seq16199 140 1e-30 seq16925 113 1e-22 seq20326 96.9 1e-17 >seq7708 Length=123229 Score = 241 bits (266), Expect = 4e-61 Identities = 198/237 (84%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || |||||| ||||||| ||||| | ||||| |||| Sbjct 3465 ACTCATTCCAATTACAGGGCCTTGAAAGAGTCCTGTATTGTTATTTTTCATCACTGCCTC 3406 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| | |||| |||||||||||| | |||||||||||||||||| ||||||||||||| Sbjct 3405 CCCAATTTGGGAGTGGGTAATTTGCACACCTGCTGCCTTCCTTGGAAGTGGTAGCCGTTT 3346 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||| ||||| ||||||| ||||||| | |||||| | |||||||||| Sbjct 3345 CTCAGGCTCCCTCTCTGGAATTGAACCCTGATTCCCCATCACCCGTGGTCACCATGGTAG 3286 Query 182 GCCACTATC-CTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 || || | |||||||||||||||||||||||||| |||||||| |||||||| Sbjct 3285 GC-ACGGTGACTACCATCGAAAGTTGATAGGGCAGATGTTTGAATGGGTCATCGCCG 3230 >seq31112 Length=6639 Score = 187 bits (206), Expect = 8e-45 Identities = 112/118 (95%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||||||||||| ||||||| |||||||||||||||||||||||| ||| Sbjct 3879 TATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCCTCC 3938 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGT 160 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 3939 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGT 3996 Score = 170 bits (188), Expect = 6e-40 Identities = 103/109 (94%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3999 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 4058 Query 135 TCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 ||||||||||||||| ||||||||| |||||| | |||||||||||| Sbjct 4059 CCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGC 4107 >seq294 Length=389498 Score = 179 bits (198), Expect = 1e-42 Identities = 140/166 (84%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAAA 398 |||||||||||||||||||||||||| |||||||| |||| | | | | | |||| Sbjct 179731 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAA 179790 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||| ||||||||||||||||||||||||||||||||||||| | | |||||| Sbjct 179791 GGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTA 179850 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 179851 GACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 179895 >seq16199 Length=38824 Score = 140 bits (154), Expect = 1e-30 Identities = 134/167 (80%), Gaps = 10/167 (6%) Strand=Plus/Minus Query 340 TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTAT 394 |||||||||||||||||||||| || || |||||||| |||| | | | | | Sbjct 6152 TTTAGCATGTATTAGCTCTAGAGTTGCCGTAGTTATCCAAGTAGGAGAGGAGCGAGCAAC 6093 Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTTA 452 |||| ||| |||||||||||||| |||||||| | ||||||||||| || ||| || Sbjct 6092 CAAAGGAACCATAACTGATTTAATAAGCCATTCCCTGTTTCACTGTACCAGCCATGCGTA 6033 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 499 | ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 6032 --CCTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACT 5989 >seq16925 Length=36393 Score = 113 bits (124), Expect = 1e-22 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 42 GTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTC 101 || ||| ||||||| | |||| | ||||||| |||||||||||| | ||||||||| || Sbjct 9261 GTCTTTTTTGTCACCATGTCCCTGAGTCGGGAATGGGTAATTTGCACACCTGCTGCCCTC 9320 Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTT 161 |||||||| | || ||| |||| ||||||| | ||||| ||||||| || ||| || Sbjct 9321 GTTGGATGTCACAACCATTTGTCAGACTCCCTCCCTGGAATTGAACCCTGATCCCCTGTC 9380 Query 162 ACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 ||| | | |||||| ||||| | |||||| | |||| |||||| || Sbjct 9381 CCCCCTGGCCACCATGTTAGGCTCGGAGTCTACCACTGCGTGTTGGTAGGGCTGA 9435 >seq20326 Length=26267 Score = 96.9 bits (106), Expect = 1e-17 Identities = 126/169 (75%), Gaps = 13/169 (8%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAA 397 |||| |||| ||||||||||||||||| | |||| |||| | | | | | ||| Sbjct 17109 AGCACGTATCAGCTCTAGAATTACCACAGCAGTCCAAGTAGGAGAGGAGCAAGCCACCAA 17168 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT---ATAGATTGCTTATA 454 | ||| |||||||||||||||| ||||| |||||||| ||| | | ||| ||| Sbjct 17169 AGGAACCATAACTGATTTAATGACACATTCACAGTTTCA-TGTGCCACCCA-TGC--ATA 17224 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || |||||| |||||| ||| |||||||| ||||||| ||| ||||| Sbjct 17225 CTGAGACATCTGTGGCTTTATCCTTGAGACACGCATATG-CTAGTGGCA 17272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1508998771712