Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq7708 241 4e-61
seq31112 187 8e-45
seq294 179 1e-42
seq16199 140 1e-30
seq16925 113 1e-22
seq20326 96.9 1e-17
>seq7708
Length=123229
Score = 241 bits (266), Expect = 4e-61
Identities = 198/237 (84%), Gaps = 3/237 (1%)
Strand=Plus/Minus
Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || |||||| ||||||| ||||| | ||||| ||||
Sbjct 3465 ACTCATTCCAATTACAGGGCCTTGAAAGAGTCCTGTATTGTTATTTTTCATCACTGCCTC 3406
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
||| | |||| |||||||||||| | |||||||||||||||||| |||||||||||||
Sbjct 3405 CCCAATTTGGGAGTGGGTAATTTGCACACCTGCTGCCTTCCTTGGAAGTGGTAGCCGTTT 3346
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||||||||||| ||||| ||||||| ||||||| | |||||| | ||||||||||
Sbjct 3345 CTCAGGCTCCCTCTCTGGAATTGAACCCTGATTCCCCATCACCCGTGGTCACCATGGTAG 3286
Query 182 GCCACTATC-CTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237
|| || | |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 3285 GC-ACGGTGACTACCATCGAAAGTTGATAGGGCAGATGTTTGAATGGGTCATCGCCG 3230
>seq31112
Length=6639
Score = 187 bits (206), Expect = 8e-45
Identities = 112/118 (95%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102
||||| | ||||||||||||||| ||||||| |||||||||||||||||||||||| |||
Sbjct 3879 TATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCCTCC 3938
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGT 160
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3939 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGT 3996
Score = 170 bits (188), Expect = 6e-40
Identities = 103/109 (94%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3999 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 4058
Query 135 TCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183
||||||||||||||| ||||||||| |||||| | ||||||||||||
Sbjct 4059 CCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGC 4107
>seq294
Length=389498
Score = 179 bits (198), Expect = 1e-42
Identities = 140/166 (84%), Gaps = 6/166 (4%)
Strand=Plus/Plus
Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAAA 398
|||||||||||||||||||||||||| |||||||| |||| | | | | | ||||
Sbjct 179731 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAA 179790
Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458
||| ||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 179791 GGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTA 179850
Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 179851 GACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 179895
>seq16199
Length=38824
Score = 140 bits (154), Expect = 1e-30
Identities = 134/167 (80%), Gaps = 10/167 (6%)
Strand=Plus/Minus
Query 340 TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTAT 394
|||||||||||||||||||||| || || |||||||| |||| | | | | |
Sbjct 6152 TTTAGCATGTATTAGCTCTAGAGTTGCCGTAGTTATCCAAGTAGGAGAGGAGCGAGCAAC 6093
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTTA 452
|||| ||| |||||||||||||| |||||||| | ||||||||||| || ||| ||
Sbjct 6092 CAAAGGAACCATAACTGATTTAATAAGCCATTCCCTGTTTCACTGTACCAGCCATGCGTA 6033
Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 499
| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 6032 --CCTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACT 5989
>seq16925
Length=36393
Score = 113 bits (124), Expect = 1e-22
Identities = 130/175 (74%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 42 GTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTC 101
|| ||| ||||||| | |||| | ||||||| |||||||||||| | ||||||||| ||
Sbjct 9261 GTCTTTTTTGTCACCATGTCCCTGAGTCGGGAATGGGTAATTTGCACACCTGCTGCCCTC 9320
Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTT 161
|||||||| | || ||| |||| ||||||| | ||||| ||||||| || ||| ||
Sbjct 9321 GTTGGATGTCACAACCATTTGTCAGACTCCCTCCCTGGAATTGAACCCTGATCCCCTGTC 9380
Query 162 ACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216
||| | | |||||| ||||| | |||||| | |||| |||||| ||
Sbjct 9381 CCCCCTGGCCACCATGTTAGGCTCGGAGTCTACCACTGCGTGTTGGTAGGGCTGA 9435
>seq20326
Length=26267
Score = 96.9 bits (106), Expect = 1e-17
Identities = 126/169 (75%), Gaps = 13/169 (8%)
Strand=Plus/Plus
Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAA 397
|||| |||| ||||||||||||||||| | |||| |||| | | | | | |||
Sbjct 17109 AGCACGTATCAGCTCTAGAATTACCACAGCAGTCCAAGTAGGAGAGGAGCAAGCCACCAA 17168
Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT---ATAGATTGCTTATA 454
| ||| |||||||||||||||| ||||| |||||||| ||| | | ||| |||
Sbjct 17169 AGGAACCATAACTGATTTAATGACACATTCACAGTTTCA-TGTGCCACCCA-TGC--ATA 17224
Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503
|| |||||| |||||| ||| |||||||| ||||||| ||| |||||
Sbjct 17225 CTGAGACATCTGTGGCTTTATCCTTGAGACACGCATATG-CTAGTGGCA 17272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1508998771712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |