Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_023503.1
Length=48800
Score E
Sequences producing significant alignments: (Bits) Value
seq57856 183 9e-42
seq11552 170 6e-38
>seq57856
Length=427
Score = 183 bits (202), Expect = 9e-42
Identities = 299/425 (70%), Gaps = 12/425 (3%)
Strand=Plus/Minus
Query 2108 TGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTCCAAGAATTTATGA 2167
||||||| || || ||||||||||| || |||||||| ||||||||||| || ||||
Sbjct 427 TGAACATTATTAATGGTGGTTCTCATAGTGATGCTCCAATTGCTTTCCAAGAGTTCATGA 368
Query 2168 TTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTC-GTTGGGGTGCTGAAATCTTC 2226
|| || | ||||| | | |||||||||| |||| | |||| ||||| | |||
Sbjct 367 TTCGCCCAGTAGGTGCTAAATCTTTCAAAGAAG-GCTTAAGAATGGGTACTGAAGTATTC 309
Query 2227 CACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAA--ACAGCCGTAGGTGACGAAG 2284
||||| ||||| ||| | | ||||| | || || || || || || ||||||||||
Sbjct 308 CACGCTCTTAAAAAAGTATTAAAAGACAGAGG--TTTAAGTACTGCTGTTGGTGACGAAG 251
Query 2285 GTGGTTTCGCACCTCGTTTCGACGGAACTGAAGATGGTGTTGAAACTATCATCAAAGCTA 2344
||||||| || || ||| || || |||||||||| | || | || ||| |||||
Sbjct 250 GTGGTTTTGCTCCAACTTTAGATGGTACTGAAGATGCACTAGACTCAATTATCGCAGCTA 191
Query 2345 TCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATCGGACTTGACTGTGCATCAT 2404
|| |||| ||||| |||| ||| ||||| || |||| | | |||||||| | |
Sbjct 190 TCAAAGCAGCTGGTTATGAGCCAAAGAAAGATGTTACAATCGCATTAGACTGTGCTGCTT 131
Query 2405 CTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAATTTGAAGGTGAAGGCG 2464
|||| || | || ||| || || || || ||||||| || ||||||| ||
Sbjct 130 CTGAGTTTT---ATAAAGATGGT---GTATATGATTACACTATTTTCGAAGGTGCTAACG 77
Query 2465 CTGCTGTTCGTACTGCTGCAGAACAAATCGACTACCTTGAAGAATTGGTTAACAAATACC 2524
| ||| |||| | || ||||||| | | ||| |||||| | ||||||||||||
Sbjct 76 CGGCTAAGCGTAATCCTCAAGAACAAGCTAAATTCCTAGAAGAACTTATTAACAAATACC 17
Query 2525 CAATC 2529
| |||
Sbjct 16 CTATC 12
>seq11552
Length=59305
Score = 170 bits (188), Expect = 6e-38
Identities = 315/454 (69%), Gaps = 6/454 (1%)
Strand=Plus/Minus
Query 1708 GACTCACGCGGTAACCCAACACTTGAAGTAGAAGTTTACACT-GAATCTGGTGCATTCGG 1766
|| ||| | ||||| |||||| | |||||||| || ||||| || | ||||| | ||
Sbjct 30440 GATTCAAGAGGTAATCCAACAGTAGAAGTAGACGTA-ACACTAGAGTGTGGTGTCGTAGG 30382
Query 1767 TCGCGGTATGGTTCCTTCAGGAGCATCAACTGGTGAACACGAAGCAGTAGAACTTCGTGA 1826
||| | |||||||| |||||||||||||||||||||||||| | |||||||| ||
Sbjct 30381 TCGTGCAGCTGTTCCTTCTGGAGCATCAACTGGTGAACACGAAGCCCTTGAACTTCGCGA 30322
Query 1827 TGGTGACAAAGCTCGTTACGGTGGTCTTGGTACTCAAAAAGCAGTTGATAACGTAAACAA 1886
|||||| ||| || || |||||| || ||||| || ||||| || | |||||
Sbjct 30321 TGGTGATAAAAAACGCTATGGTGGTAAAGGAGTACAAAAGGCTGTTGAAAATATCAACAA 30262
Query 1887 CGTTATTGCT-GAGCACATCATCGG-ATTCGACGTACGTGATCAACAAGGTATTGACCGC 1944
| |||||| ||| | ||||| ||| | | | ||| ||| | || ||
Sbjct 30261 CAAAATTGCTCCTGCA-TTAATCGGTATTTCA-GCCCTTGAGCAAAATAAAATAGATAAA 30204
Query 1945 GCAATGATCGCTCTTGACGGTACTCCAAACAAAGGTAAACTTGGTGCCAACGCTATTCTT 2004
|||| | | | || |||||| || ||| ||| | ||||| || || |||||
Sbjct 30203 ATAATGTTAGAGTTAGATGGTACTAAAACTAAATCTAACTTAGGTGCTAATGCACTTCTT 30144
Query 2005 GGTGTGTCTATCGCTGTAGCACGCGCAGCTGCTGACTACCTTGAAGTTCCACTTTACAGC 2064
||||| ||| | || || ||| ||||| || || ||| | || | ||||| || |
Sbjct 30143 GGTGTATCTCTAGCAGTTGCAAAAGCAGCAGCAGAATACTTAGATATGCCACTGTATCGT 30084
Query 2065 TACCTTGGCGGATTCAACACTAAAGTTCTTCCAACTCCAATGATGAACATCATCAACGGT 2124
||| |||| ||| |||||| | || | || || ||||||||||| || || |||
Sbjct 30083 TACATTGGTGGAACAAACACTTATGTAATGCCTGTACCTATGATGAACATTATTAATGGT 30024
Query 2125 GGTTCTCACTCAGACGCTCCAATCGCTTTCCAAG 2158
|||||||| || |||||||| ||||||||||
Sbjct 30023 GGTTCTCATAGTGATGCTCCAATTGCTTTCCAAG 29990
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 155866497565968
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |