Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq57856 183 9e-42 seq11552 170 6e-38 >seq57856 Length=427 Score = 183 bits (202), Expect = 9e-42 Identities = 299/425 (70%), Gaps = 12/425 (3%) Strand=Plus/Minus Query 2108 TGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTCCAAGAATTTATGA 2167 ||||||| || || ||||||||||| || |||||||| ||||||||||| || |||| Sbjct 427 TGAACATTATTAATGGTGGTTCTCATAGTGATGCTCCAATTGCTTTCCAAGAGTTCATGA 368 Query 2168 TTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTC-GTTGGGGTGCTGAAATCTTC 2226 || || | ||||| | | |||||||||| |||| | |||| ||||| | ||| Sbjct 367 TTCGCCCAGTAGGTGCTAAATCTTTCAAAGAAG-GCTTAAGAATGGGTACTGAAGTATTC 309 Query 2227 CACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAA--ACAGCCGTAGGTGACGAAG 2284 ||||| ||||| ||| | | ||||| | || || || || || || |||||||||| Sbjct 308 CACGCTCTTAAAAAAGTATTAAAAGACAGAGG--TTTAAGTACTGCTGTTGGTGACGAAG 251 Query 2285 GTGGTTTCGCACCTCGTTTCGACGGAACTGAAGATGGTGTTGAAACTATCATCAAAGCTA 2344 ||||||| || || ||| || || |||||||||| | || | || ||| ||||| Sbjct 250 GTGGTTTTGCTCCAACTTTAGATGGTACTGAAGATGCACTAGACTCAATTATCGCAGCTA 191 Query 2345 TCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATCGGACTTGACTGTGCATCAT 2404 || |||| ||||| |||| ||| ||||| || |||| | | |||||||| | | Sbjct 190 TCAAAGCAGCTGGTTATGAGCCAAAGAAAGATGTTACAATCGCATTAGACTGTGCTGCTT 131 Query 2405 CTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAATTTGAAGGTGAAGGCG 2464 |||| || | || ||| || || || || ||||||| || ||||||| || Sbjct 130 CTGAGTTTT---ATAAAGATGGT---GTATATGATTACACTATTTTCGAAGGTGCTAACG 77 Query 2465 CTGCTGTTCGTACTGCTGCAGAACAAATCGACTACCTTGAAGAATTGGTTAACAAATACC 2524 | ||| |||| | || ||||||| | | ||| |||||| | |||||||||||| Sbjct 76 CGGCTAAGCGTAATCCTCAAGAACAAGCTAAATTCCTAGAAGAACTTATTAACAAATACC 17 Query 2525 CAATC 2529 | ||| Sbjct 16 CTATC 12 >seq11552 Length=59305 Score = 170 bits (188), Expect = 6e-38 Identities = 315/454 (69%), Gaps = 6/454 (1%) Strand=Plus/Minus Query 1708 GACTCACGCGGTAACCCAACACTTGAAGTAGAAGTTTACACT-GAATCTGGTGCATTCGG 1766 || ||| | ||||| |||||| | |||||||| || ||||| || | ||||| | || Sbjct 30440 GATTCAAGAGGTAATCCAACAGTAGAAGTAGACGTA-ACACTAGAGTGTGGTGTCGTAGG 30382 Query 1767 TCGCGGTATGGTTCCTTCAGGAGCATCAACTGGTGAACACGAAGCAGTAGAACTTCGTGA 1826 ||| | |||||||| |||||||||||||||||||||||||| | |||||||| || Sbjct 30381 TCGTGCAGCTGTTCCTTCTGGAGCATCAACTGGTGAACACGAAGCCCTTGAACTTCGCGA 30322 Query 1827 TGGTGACAAAGCTCGTTACGGTGGTCTTGGTACTCAAAAAGCAGTTGATAACGTAAACAA 1886 |||||| ||| || || |||||| || ||||| || ||||| || | ||||| Sbjct 30321 TGGTGATAAAAAACGCTATGGTGGTAAAGGAGTACAAAAGGCTGTTGAAAATATCAACAA 30262 Query 1887 CGTTATTGCT-GAGCACATCATCGG-ATTCGACGTACGTGATCAACAAGGTATTGACCGC 1944 | |||||| ||| | ||||| ||| | | | ||| ||| | || || Sbjct 30261 CAAAATTGCTCCTGCA-TTAATCGGTATTTCA-GCCCTTGAGCAAAATAAAATAGATAAA 30204 Query 1945 GCAATGATCGCTCTTGACGGTACTCCAAACAAAGGTAAACTTGGTGCCAACGCTATTCTT 2004 |||| | | | || |||||| || ||| ||| | ||||| || || ||||| Sbjct 30203 ATAATGTTAGAGTTAGATGGTACTAAAACTAAATCTAACTTAGGTGCTAATGCACTTCTT 30144 Query 2005 GGTGTGTCTATCGCTGTAGCACGCGCAGCTGCTGACTACCTTGAAGTTCCACTTTACAGC 2064 ||||| ||| | || || ||| ||||| || || ||| | || | ||||| || | Sbjct 30143 GGTGTATCTCTAGCAGTTGCAAAAGCAGCAGCAGAATACTTAGATATGCCACTGTATCGT 30084 Query 2065 TACCTTGGCGGATTCAACACTAAAGTTCTTCCAACTCCAATGATGAACATCATCAACGGT 2124 ||| |||| ||| |||||| | || | || || ||||||||||| || || ||| Sbjct 30083 TACATTGGTGGAACAAACACTTATGTAATGCCTGTACCTATGATGAACATTATTAATGGT 30024 Query 2125 GGTTCTCACTCAGACGCTCCAATCGCTTTCCAAG 2158 |||||||| || |||||||| |||||||||| Sbjct 30023 GGTTCTCATAGTGATGCTCCAATTGCTTTCCAAG 29990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155866497565968