Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq14 163 5e-38 seq11 107 3e-21 seq9 80.6 4e-13 seq436 78.8 1e-12 >seq14 Length=21695963 Score = 163 bits (180), Expect = 5e-38 Identities = 105/115 (91%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 12013883 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 12013824 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 12013823 ACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTG 12013769 >seq11 Length=26356634 Score = 107 bits (118), Expect = 3e-21 Identities = 152/208 (73%), Gaps = 13/208 (6%) Strand=Plus/Plus Query 28 GCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTG 87 |||||| |||| | |||||||||||||||||||||||| ||||| ||||||||| || Sbjct 9469184 GCGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGATATTG-CTCAAACTT-GGGTG 9469241 Query 88 GCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGG--GC--- 142 |||| | |||| | |||||||||| ||| | || | | | |||| || Sbjct 9469242 GCTGAATGCCACTTGTCCCTCTAAAAAGTTGGAGGACACCGCTGGCTCTTGGGTTGCATA 9469301 Query 143 --TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 || |||||| | || | || ||| |||| | |||||||||||||||| ||||||| Sbjct 9469302 AGTAGTTAGCATG-CCAGATTTCATTCTTTATTGAAATTAACCAGACAAATTGCTCCACC 9469360 Query 201 AACTAAGAACGGCCATGCACCACCACCC 228 |||| ||| | ||||| |||||||| Sbjct 9469361 AACT---AACAGTGATGCAACACCACCC 9469385 >seq9 Length=27295742 Score = 80.6 bits (88), Expect = 4e-13 Identities = 58/66 (88%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| || |||| |||| | ||||||||||||||||||||||||||| || || Sbjct 4841613 GTCAGTGTAGCACGTGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTACTG-CT 4841671 Query 75 CAAACT 80 ||| || Sbjct 4841672 CAATCT 4841677 >seq436 Length=405883 Score = 78.8 bits (86), Expect = 1e-12 Identities = 73/93 (78%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| ||| || | || |||| |||| |||||||||||||||| |||| ||||||| Sbjct 91069 CTAGTTAACATGCCAAAGTCTTGTTCATTATCGGAATTAACCACGAAAATTACTCCACTG 91128 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAA 234 | ||||||| |||||| ||||||| || |||| Sbjct 91129 AGTAAGAACAGCCATGTACCACCATGCACAGAA 91161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796739923023