Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3 365 1e-98 seq12 242 1e-61 seq15 224 3e-56 seq115 178 4e-42 seq177 147 7e-33 seq4 98.7 3e-18 seq416 87.8 6e-15 seq29 86.0 2e-14 >seq3 Length=39231737 Score = 365 bits (404), Expect = 1e-98 Identities = 221/232 (95%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 9225254 TCTACTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTTGCTGGATAGT 9225313 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 || |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 9225314 AGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCATCACTAATTAGATGACGAG 9225373 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| Sbjct 9225374 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCTG-TTACCCGCGCTTCATTGAA 9225432 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 9225433 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 9225484 Score = 232 bits (256), Expect = 2e-58 Identities = 223/289 (77%), Gaps = 29/289 (10%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||| ||||| ||||||| | |||| || || | | | ||||||||||||| |||| Sbjct 9438722 CTCCCACTCATTCTGCACCTCTTATGTCACTTTACCATGCCAGACTAGAGTCAAGTTCAA 9438781 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||| ||||||| || ||||||||||||||||||| || | Sbjct 9438782 CAGGGTCATCTTTCC------AT------------GTTCCCTTGGCTGTGGTTTTACTGG 9438823 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA---G 413 |||||||||||||||||||||| ||| ||| | || | |||||||||| | Sbjct 9438824 ATAGTAGATAGGGACAGTGGGACTCTTGTT--------CCTGAACATCACTAATTATTAG 9438875 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 ||| |||||||||||||||||| |||||||||||||||||||| ||||||| ||| Sbjct 9438876 ATGGTGAGGCATTTGGCTACCTTGAGAGAGTCATAGTTACTCCCATGATTTACCCAGGCT 9438935 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 | ||||||||||||| ||||||||| ||| || ||| ||||||||||| Sbjct 9438936 TCATTGAATTTCTTCATTTTGACATTTAGAACATTGGCCAGAAATCACA 9438984 >seq12 Length=25865670 Score = 242 bits (268), Expect = 1e-61 Identities = 143/149 (96%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 ||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 23075779 GTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGT 23075838 Query 404 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT 463 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 23075839 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCACCGTT 23075898 Query 464 TACCCGCGCTTGGTTGAATTTCTTCACTT 492 ||||||||||| |||||||||||||||| Sbjct 23075899 TACCCGCGCTTCATTGAATTTCTTCACTT 23075927 Score = 80.6 bits (88), Expect = 9e-13 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||| |||| Sbjct 20205055 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTATGTTACC 20205114 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAAC 95 ||| |||| ||| | ||||||||||||| Sbjct 20205115 ATTTGACAGGTGTACTGCCCCAGCCAAAC 20205143 >seq15 Length=20492398 Score = 224 bits (248), Expect = 3e-56 Identities = 179/217 (82%), Gaps = 15/217 (7%) Strand=Plus/Minus Query 320 TCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA 379 || ||||| ||| ||||| || ||| ||||| || |||||||| |||||||| |||||| Sbjct 15255972 TCTGCCAAACCCATTCCCCTGTCTG--GTTTCTCTGGATAGTAGCTAGGGACAATGGGAA 15255915 Query 380 TCTCGTTAATCCATTCATGCGCGTCACTAAT-------------TAGATGACGAGGCATT 426 ||||||| ||||| ||||| || | |||||| |||||||||||||||| Sbjct 15255914 TCTCGTTCATCCACTCATGTGCATTACTAATGTGCATTACTAATTAGATGACGAGGCATT 15255855 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 |||||||||| ||||||||||||||||||| ||| |||||| |||||| |||| |||| Sbjct 15255854 TGGCTACCTTCAGAGAGTCATAGTTACTCCTGCCATTTACCTGCGCTTCACTGAACTTCT 15255795 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 |||||||||||||||||||||||||| |||||||||| Sbjct 15255794 TCACTTTGACATTCAGAGCACTGGGCGGAAATCACAT 15255758 >seq115 Length=6755939 Score = 178 bits (196), Expect = 4e-42 Identities = 216/289 (75%), Gaps = 8/289 (3%) Strand=Plus/Plus Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTC-GGACTAGAGTCAAGCTCAA 296 ||||||||| ||||||| || | ||| | || | ||| || || ||| |||| Sbjct 789087 TCCCACTTAATCTACACTTCCTATGTCCCTGTACCATGTCAGGTTTACAGTT----TCAA 789142 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||| ||||||||| || | | | | |||| ||||||||||||| ||||| || Sbjct 789143 CAGAGTCTTCTTTGACCACAGGTCTTTCTTAGCCA-TTCCCTTGGCTGTTGTTTCATCAG 789201 Query 357 ATAGTAGATAGGGACAGTGGGAA-TCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 ||| ||| || |||||||| || | || || | |||||||||| | | |||||||||| Sbjct 789202 ATAATAGCTAAAGACAGTGGAAAATATCATTCAGCCATTCATGCATGCCCCTAATTAGAT 789261 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC-GTTTACCCGCGCTT 474 | | ||||||||||| |||||||||||||| ||||| || || |||| | |||||| Sbjct 789262 GGTGGAGCATTTGGCTATCTTAAGAGAGTCATGGTTACAACCACCAATTTATCTGCGCTT 789321 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 ||||| | |||||||||||||||||| |||| |||| ||||||||| Sbjct 789322 CAGTGAATGTATTCACTTTGACATTCAGAACACTAGGCAAAAATCACAT 789370 >seq177 Length=4484908 Score = 147 bits (162), Expect = 7e-33 Identities = 124/150 (83%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || || ||||||||||||||||| ||| ||| | | | | |||||||||||| |||| Sbjct 768603 CTTCCTCTTATTCTACACCTCTCGTGTCTCTTCCCCATGCCAGACTAGAGTCAAACTCA- 768545 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||| |||||||||||| ||||||| |||||||| | ||||||||||||||||||||| | Sbjct 768544 CAGGATCTTCTTTCCCCACTGATTCTGCCAAGCCTGGTCCCTTGGCTGTGGTTTCGCTGG 768485 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTT 386 || || ||| || ||||||||||| ||| Sbjct 768484 GGAG-AGGTAGAGATAGTGGGAATCTTGTT 768456 >seq4 Length=34388835 Score = 98.7 bits (108), Expect = 3e-18 Identities = 168/237 (71%), Gaps = 19/237 (8%) Strand=Plus/Plus Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTG 344 ||| ||| ||||| ||||| || || |||||||| ||||||| ||| | | ||| Sbjct 19525629 AGTTAAGGTCAACCAGGTCT-CT---CCTGCTGATTCTGCCAAGCTAGTTGCTCTA-CTG 19525683 Query 345 TGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404 || | || ||| ||| |||| ||||||||||||| |||| ||||||||| ||| Sbjct 19525684 CTCTT-CACTGGATGCTAGGTAGGAACAGTGGGAATCTTGTTA-TCCATTCATAGAGGTC 19525741 Query 405 ACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 464 ||| | |||| | |||| ||||||||| | | |||||| | ||||||| | Sbjct 19525742 ACTGTTGAGATAATGAGGTATTTGGCTATCCT--GAGAGTTGTGGTTACTCTGA-----T 19525794 Query 465 ACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 |||| | || ||| ||||||| ||||||| |||||||||||||| |||| Sbjct 19525795 ACCCTCATTTCATTGGATTTCTT-----TGACATTTGAAGCACTGGGCAGAAGTCAC 19525846 >seq416 Length=461964 Score = 87.8 bits (96), Expect = 6e-15 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 38 TGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTC 97 |||| | ||||||||||||||||||| |||| |||| ||| ||||||||| ||||||| Sbjct 398950 TGAGCTCGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAAACTC 398891 Query 98 CCCACCTGACAATGTC 113 |||||||| || |||| Sbjct 398890 CCCACCTGGCACTGTC 398875 >seq29 Length=15480060 Score = 86.0 bits (94), Expect = 2e-14 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 14836806 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 14836855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635072732384