Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20brandtii_20[refseq_20GCF_5F000412655.1_202013-06-28] 169,750 sequences; 2,107,242,811 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq152401 194 3e-47 seq158305 179 7e-43 seq163693 176 9e-42 seq152801 174 3e-41 seq168516 100 5e-19 >seq152401 Length=6901723 Score = 194 bits (214), Expect = 3e-47 Identities = 200/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||| || | ||| | |||| || | ||||| |||||||||||||||| Sbjct 4966438 CTTCTTAGAGGCACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 4966495 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 4966496 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 4966555 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 4966556 CCTACGCCGGCAGGCGCGGGTAACCCATTGAACCCCATTCGTGATGGGGATCGGGGATTG 4966615 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 4966616 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 4966675 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 4966676 AAGTCCCTGCCCTTTGTA 4966693 >seq158305 Length=1435 Score = 179 bits (198), Expect = 7e-43 Identities = 197/258 (76%), Gaps = 7/258 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 1096 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 1153 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 1154 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 1213 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 1214 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 1273 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||| || Sbjct 1274 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCG----TT 1329 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 1330 AAGTCCCTGCCCTTTGTA 1347 >seq163693 Length=44555 Score = 176 bits (194), Expect = 9e-42 Identities = 196/258 (76%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||||||||| | || | | || || ||| | ||| ||||||||||||||||| Sbjct 297 CTTCTTAGAGGGACAAGCGACGCTAGTCGCACGAAAAT-GAG-CAATAACAGGTCTGTGA 354 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||| | |||||||||| |||||||| |||| | || |||||| | Sbjct 355 TGCCCTTAGATGTCCGGGGCCGCACGTGCGCTACAATGACGGTTTCAGCGAGTTTTGAAA 414 Query 192 CTTGGCCGGAA-GGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | ||||| ||| || |||| || || | | | |||||| ||||| | | ||| Sbjct 415 CCTGGCCCGAAAGGGTTGGGCAAACTGAGTCATAACCGTCGTGACTGGGATCGGGGCTTG 474 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| ||| ||||| || ||||| ||| ||| ||||| Sbjct 475 CAATTATTCCCCGTGAACGAGGAATTCCTGGTAAGTGCAAGTCATAAGCTTGCGCTGATT 534 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 535 ACGTCCCTGCCCTTTGTA 552 >seq152801 Length=6144 Score = 174 bits (192), Expect = 3e-41 Identities = 178/226 (79%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| ||| ||| ||||| Sbjct 4367 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCATGCGTGCTAC 4309 Query 166 ACTGACAGA--GC-CAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAA 222 |||||| | || || | || | | ||| | || |||| ||||||| || ||||| Sbjct 4308 ACTGACTGGTGGCTCAGTGTGTGCCTACCCTACCCAGGCAGGTGTGGGTAACCT-GTTAA 4250 Query 223 ACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGT 282 || | | ||| || |||| | | |||||||||||| | | | |||||||||| || ||| Sbjct 4249 ACCCATT-GTGATGAGGATTGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGT 4191 Query 283 AAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||| ||||| ||| |||||||||| |||||||||||||||| Sbjct 4190 AAGTGCGGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTA 4145 >seq168516 Length=4961687 Score = 100 bits (110), Expect = 5e-19 Identities = 87/104 (84%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 4420573 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 4420516 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGA 174 |||||||||||||| | |||| ||||||||||||||||||| || Sbjct 4420515 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGA 4420472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 945592128000