Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq878 104 1e-20 seq128 104 1e-20 seq1496 86.0 3e-15 seq1053 86.0 3e-15 >seq878 Length=194879 Score = 104 bits (114), Expect = 1e-20 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 77043 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 77102 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | ||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 77103 CATCGCCAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 77159 >seq128 Length=3675711 Score = 104 bits (114), Expect = 1e-20 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 1918826 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 1918885 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | ||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 1918886 CATCGCAAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 1918942 >seq1496 Length=61245 Score = 86.0 bits (94), Expect = 3e-15 Identities = 94/125 (75%), Gaps = 10/125 (8%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAA-------- 52 |||||||||||||||| |||| || ||| |||| ||| |||| |||| Sbjct 13758 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAAGGCCTCCG 13817 Query 53 CATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTC 112 ||||||| || | ||||||||| ||||| ||| | ||||||||||||||||||||| Sbjct 13818 CATCGCC--ATGGCCAGTCGGCATCGTTTATGGTCGGGGCTACGACGGTATCTGATCGTC 13875 Query 113 TTCGA 117 ||||| Sbjct 13876 TTCGA 13880 >seq1053 Length=110669 Score = 86.0 bits (94), Expect = 3e-15 Identities = 94/125 (75%), Gaps = 10/125 (8%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAA-------- 52 |||||||||||||||| |||| || ||| |||| ||| |||| |||| Sbjct 56170 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAAGGCCTCCA 56229 Query 53 CATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTC 112 ||||||| || | ||||||||| ||||| ||| | ||||||||||||||||||||| Sbjct 56230 CATCGCC--ATGGCCAGTCGGCATCGTTTATGGTCGGGGCTACGACGGTATCTGATCGTC 56287 Query 113 TTCGA 117 ||||| Sbjct 56288 TTCGA 56292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278369583060