Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq7759 149 1e-33 seq10 104 4e-20 seq3 91.5 2e-16 >seq7759 Length=36627259 Score = 149 bits (164), Expect = 1e-33 Identities = 185/250 (74%), Gaps = 14/250 (6%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || ||||| || |||| | || |||||||||||| |||| ||||||||| ||| | | Sbjct 27781089 CAATGTAGAGCATGTGCAGTCCCCGACATCTAAGGGCGTCACTGACCTGTTACTGC-TAA 27781031 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGA 136 | ||| | | ||| ||| | ||||||| |||||| | | | || || | | | Sbjct 27781030 ATCTTGGGTAG-CTGAGCACCACTTGTCCCTCGAAGAAGTCGGAAAACA--CAGACTTG- 27780975 Query 137 TGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 |||| ||| |||||||| | ||||| ||| ||| ||||||||||||||| Sbjct 27780974 -GGGGTTGCGTAACTAGTTAGCAGGCCAGAGTCTCATTCCTTACTGGAATTAACCAGACA 27780916 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 ||| |||||||| ||||||||||||||| |||||||||| |||||||||||| ||||| Sbjct 27780915 GATCTCTCCACCAGCTAAGAACGGCCATGTGCCACCACCCACAGAATCAAGAAAAAGCTA 27780856 Query 249 TCAATCTGTC 258 ||| ||| || Sbjct 27780855 TCACTCTATC 27780846 >seq10 Length=10432422 Score = 104 bits (114), Expect = 4e-20 Identities = 81/94 (86%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 22 TAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 81 |||||||||||| |||| | |||||||||||||||||||||||||||||| ||||| | | Sbjct 5800236 TAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATC-T 5800179 Query 82 CCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 | |||||| | |||| | |||||||||||||| Sbjct 5800178 CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAG 5800145 >seq3 Length=3957629 Score = 91.5 bits (100), Expect = 2e-16 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| |||| |||| |||||||||||| ||||| ||| ||| | ||||||| ||||||| Sbjct 3109631 GTCTTGTTCATTATAGGAATTAACCAGGCAAATTACTTCACTGAATAAGAACAGCCATGC 3109690 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 ||||||| || |||||| |||||| || || || Sbjct 3109691 ACCACCATGCACAGAATCGGGAAAGAACTTTCCAT 3109725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796739236032