Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq7762 316 3e-84 seq7781 311 1e-82 seq7818 223 6e-56 seq7856 190 3e-46 seq7759 113 8e-23 >seq7762 Length=3345841 Score = 316 bits (350), Expect = 3e-84 Identities = 248/294 (84%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 14438 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 14379 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||| |||||||||| ||||||||||||||||||||||||||| |||| | Sbjct 14378 ACCACGGTCTAAGCCCAGCTCAC-TTCCCTATTAGTGGGTGAACAATCCAATGCTTGGTG 14320 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 14319 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 14260 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 14259 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 14200 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | ||||||| ||||| |||||| ||| ||||||| Sbjct 14199 TAAAACCCAAAAGGTCAGAAGGATCTTGAGGCCCTGCTTTCACGGTCTGTATTC 14146 >seq7781 Length=3670399 Score = 311 bits (344), Expect = 1e-82 Identities = 228/264 (86%), Gaps = 1/264 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 473432 TCATCAGTAGGGTAAAACTAACCTGTCTCAGGACGGTCTAAAGCCAGCTCACGTTCCCTA 473491 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||||| |||| || ||||||||| ||||| |||||||| || Sbjct 473492 TTAGTGGGTGAACAATCCAA-GCTTGGTGAGTTCTGCTTCACAATGATGGGAAGAGCTGA 473550 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 473551 CATCGAAGGATCACAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 473610 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||| ||| |||||| || | ||| | || | |||||||| ||| Sbjct 473611 CTGTGGTAACTTTCCTGACACCTCCTGCTTAAAACCCGAAAGGTCAGAAGGATCGTGAGG 473670 Query 271 CCACACTTTCATGGTTTGTATTCA 294 || | |||||| ||| |||||||| Sbjct 473671 CCCCGCTTTCACGGTCTGTATTCA 473694 >seq7818 Length=84771923 Score = 223 bits (246), Expect = 6e-56 Identities = 191/235 (81%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | |||||||| | | || | ||||||| |||||||||||||| || | Sbjct 56016179 TACTAAGCAGGATTACCATGGCAACAACACATTATCAGTAAGGTAAAACTAACCTATCCC 56016120 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 || | ||||||| |||||||||| || |||| ||||| |||||||||||| || | | Sbjct 56016119 ATTATGGTCTAATCCCAGCTCACCTTTCCTACTAGTGAATGAACAATCCAATGCCTGGTG 56016060 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||| | ||||| |||||||| |||||||| | | || Sbjct 56016059 AATTCTGCTTCATAATGATAGGAAGAGACAACATCAAAGGATCATAAAGCAACATTGTTA 56016000 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||| ||| ||||||||||||| |||||||||| ||||| ||| || Sbjct 56015999 TGAACGCTTGGCCACCATAAGCCAGTTATCCTTGTGGTAACTCTTCTGACACTTC 56015945 >seq7856 Length=16994587 Score = 190 bits (210), Expect = 3e-46 Identities = 208/273 (76%), Gaps = 14/273 (5%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTC----- 86 ||||||||| ||||||||||| |||| ||||| |||||||||||||||| || Sbjct 16642815 CATCAGTAGTGTAAAACTAACATGTC-CATGATAGTCTAAACCCAGCTCATGTAAGTGAA 16642873 Query 87 ----CCTATTAGTGG-GTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGG 141 || ||||||| ||||||||||||| | || |||||||||||| ||||||| Sbjct 16642874 CGATCCAATTAGTGAAGTGAACAATCCAATGTTTGGTGAATTCTGCTTCACAGTGATAGG 16642933 Query 142 AAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201 |||||| ||| | ||| ||||||||||| | | ||| |||| ||||| |||||||||| Sbjct 16642934 AAGAGCTGACTTTGAAAGATCAAAAAGCGA--TTGCTGTGAATACTTGGTTGCCACAAGC 16642991 Query 202 CAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGG 261 ||||||||||| |||||||||||| |||||| | || ||| | | || | ||| Sbjct 16642992 CAGTTATCCCTTTGGTAACTTTTCCAACACCTCCTG-CTGAAAACCCAAAGGTCAGAAGT 16643050 Query 262 ATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||| |||| |||||||||||| ||||| || Sbjct 16643051 ATCATGCGGCCCCACTTTCATGGTCTGTATCCA 16643083 >seq7759 Length=36627259 Score = 113 bits (124), Expect = 8e-23 Identities = 84/97 (87%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 137 ATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA 196 ||||||||| |||||| ||||||||||||||||| | |||| | | |||||| |||| Sbjct 27783433 ATAGGAAGAATCGACATA-AAGGATCAAAAAGCAACCTTGCTAAGCATGCTTGGACGCCA 27783491 Query 197 CAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 |||||||||||||||||||||||||||||| ||||| Sbjct 27783492 TAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCT 27783528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854332741632