Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq134 372 1e-100 seq229 262 1e-67 seq4 242 1e-61 seq170 228 3e-57 seq18 217 5e-54 seq285 206 9e-51 seq90 167 8e-39 >seq134 Length=5086271 Score = 372 bits (412), Expect = 1e-100 Identities = 262/297 (88%), Gaps = 3/297 (1%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||| |||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 1337347 CTCCCACTTGTTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 1337406 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||| |||||||||||||| ||| ||||||||||||| ||||| || | Sbjct 1337407 CAGGGTCTTCTTTCCT-GCTGATTCCGCCAAACCCATTCCCTTGGCTGTTGTTTCACTGG 1337465 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||| |||||||||| ||| |||||||||| | ||||||||||||||| Sbjct 1337466 ATAGTAGGTAGGGATGGTGGGAATCTTGTTCATCCATTCATACATGTCACTAATTAGATG 1337525 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 ||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||| Sbjct 1337526 ACGAGGCATTTGGCTCTCTTAAGAGAGTC--AGTTACTCCCGCCGTTTACCCACGCTTCA 1337583 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||| ||||| |||| |||||||||||||| ||||||| Sbjct 1337584 TTGAATTTCTTCACTTTGACATTTAGAGCCCTGGACAGAAATCACATTGTGTCAACA 1337640 >seq229 Length=4137368 Score = 262 bits (290), Expect = 1e-67 Identities = 235/297 (79%), Gaps = 27/297 (9%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||| |||||||||||||| |||| ||||| | | | ||||||||||||||| | Sbjct 1754607 CTCCCACTCATTCTACACCTCTCCTGTCACTTCACCATGCCAGACTAGAGTCAAGCTTGA 1754666 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||| ||||||| || ||||||||||||||||||| ||| | Sbjct 1754667 CAGGGTCATCTTTCC------AT------------GTTCCCTTGGCTGTGGTTTTGCTGG 1754708 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||| |||||||||||||||||| ||| | || || |||||| |||| || Sbjct 1754709 ATAGTACGTAGGGACAGTGGGAATCTTGTT--------CCTGTGCATCACTA-TTAGGTG 1754759 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 ||| ||||||||||||||||||||||| ||||||||||||| ||||||| |||| Sbjct 1754760 GTGAGACATTTGGCTACCTTAAGAGAGTCCTAGTTACTCCCGCGATTTACCCAGGCTTCA 1754819 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||| |||||||||| |||||||||||| ||||||| Sbjct 1754820 TTGAATTTCTTCACTTTGACATTTAGAGCACTGGCCAGAAATCACATCATGTCAACA 1754876 >seq4 Length=10198000 Score = 242 bits (268), Expect = 1e-61 Identities = 182/211 (86%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 336 CCTTGG-CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394 |||||| |||||||||| ||||||||||| |||||||||||||||||||||| ||||||| Sbjct 6113367 CCTTGGTCTGTGGTTTCTCTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATT 6113308 Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 ||| || | ||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 6113307 CATATGCATTACTAATTAGATGA---GGCACCTGGCTACCTTAAGAGAGTCATAGTTACT 6113251 Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 || ||| ||||| | |||| ||||| ||||||||||||||||| || | |||||||| Sbjct 6113250 CCTGCCATTTACTTGTGCTTCATTGAACTTCTTCACTTTGACATTGAGGCCGCTGGGCAG 6113191 Query 515 AAATCACATTGCGTC---AACATCACTTTCT 542 ||||||||||||||| |||||||| |||| Sbjct 6113190 AAATCACATTGCGTCAAGAACATCACCTTCT 6113160 >seq170 Length=3862854 Score = 228 bits (252), Expect = 3e-57 Identities = 200/257 (78%), Gaps = 33/257 (13%) Strand=Plus/Minus Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298 |||||||||||||||||||||| ||| ||||| | | |||||||||||||||||||| Sbjct 1414431 CCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACA 1414372 Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358 |||||||||||||| || |||||| | |||||||||||||||||||||||| Sbjct 1414371 GGGTCTTCTTTCCCTGC-GATTCCTCTAAGCCCGTTCCCTTGGCTGTGGTT--------- 1414322 Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||| ||||||||||| | ||| ||||||||||||| Sbjct 1414321 -----------------------TCGTTCATCCATTCATGAGGGTCGCTAATTAGATGAC 1414285 Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 ||||||||||||||||||||||||||||||||||||||| || ||| || || ||| | Sbjct 1414284 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCACCATTTCCCTGCACTTCACT 1414225 Query 479 GAATTTCTTCACTTTGA 495 |||||||||| |||||| Sbjct 1414224 GAATTTCTTCGCTTTGA 1414208 >seq18 Length=4034135 Score = 217 bits (240), Expect = 5e-54 Identities = 170/199 (85%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 337 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCA 396 ||||||||||| ||| || || ||||| |||||||||||||||||| || ||||||||| Sbjct 126590 CTTGGCTGTGGCTTCTCTGGACAGTAGGTAGGGACAGTGGGAATCTAATTTATCCATTCA 126649 Query 397 TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 456 ||| | ||| |||||||||||| ||||||||||||||||||| | ||||||||||||||| Sbjct 126650 TGCACATCATTAATTAGATGACAAGGCATTTGGCTACCTTAAAAAAGTCATAGTTACTCC 126709 Query 457 CGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGC-ACTGGGCAGA 515 |||| ||||| | || | ||||||||||||| ||||||||||||| | |||| |||| Sbjct 126710 CGCCATTTACTCATGC-TCATTGAATTTCTTCATTTTGACATTCAGAACTGCTGGACAGA 126768 Query 516 AATCAC-ATTGCGTCAACA 533 |||||| || | ||||||| Sbjct 126769 AATCACAATGGTGTCAACA 126787 >seq285 Length=3212572 Score = 206 bits (228), Expect = 9e-51 Identities = 231/302 (76%), Gaps = 9/302 (3%) Strand=Plus/Plus Query 224 TGCGCCGAAACGGCT-CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTC-GGAC 281 ||| || | | |||| |||||||| ||||||| || | ||| | ||| | ||| || Sbjct 58720 TGCCCCCACAGGGCTTCCCACTTAATCTACACTTCCTATGTCTCTGCACCATGTCAGGTT 58779 Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341 || ||| |||||||||||| |||| || | |||| | ||||| ||||||||| Sbjct 58780 TACAGTT----TCAACAGGGTCTACTTTGACCACAGATTTTTCTAAGCCA-TTCCCTTGG 58834 Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATC-TCGTTAATCCATTCATGCG 400 |||||||| | ||||| ||| || ||||| || ||| || || |||||||||||| Sbjct 58835 CTGTGGTTCCATCAGATAATAGCTAAAGACAGGGGAAATTATCATTCATCCATTCATGCA 58894 Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC-GC 459 ||| ||||||||||| | ||||||||||||||||||||| |||||||||| ||| | Sbjct 58895 TGTCCCTAATTAGATGGTGGAGCATTTGGCTACCTTAAGAGAATCATAGTTACACCCATC 58954 Query 460 CGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATC 519 |||| | | |||| |||||||||||||||||||||||||| |||| |||| ||||| Sbjct 58955 AATTTATCTGGGCTTCAGTGAATTTCTTCACTTTGACATTCAGAACACTAGGCAAAAATC 59014 Query 520 AC 521 || Sbjct 59015 AC 59016 >seq90 Length=5156342 Score = 167 bits (184), Expect = 8e-39 Identities = 127/150 (85%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| | | ||| | | | | |||||||||||| ||| | Sbjct 4619025 CTCCCACTTATTCTACACCTCTCATGCCTCTTCCCCATGCCAGACTAGAGTCAAACTCGA 4618966 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||| |||| ||||| | ||||||| |||||||| | ||||||||||||||||||||| Sbjct 4618965 CAGGATCTTTTTTCCTCACTGATTCTGCCAAGCCTGGTCCCTTGGCTGTGGTTTCGCTGT 4618906 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTT 386 ||||||| |||||| ||||||||||| ||| Sbjct 4618905 ATAGTAGGTAGGGATAGTGGGAATCTTGTT 4618876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635136341664