Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq12372 149 3e-33
seq503 140 1e-30
seq9326 131 7e-28
seq558 107 8e-21
seq7884 104 1e-19
seq11639 75.2 5e-11
seq9161 75.2 5e-11
seq8750 75.2 5e-11
>seq12372
Length=1948381
Score = 149 bits (164), Expect = 3e-33
Identities = 105/120 (88%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1218947 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 1218888
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||||| || |||||| ||| ||||||||||| ||||| | |||||||||||||||
Sbjct 1218887 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 1218828
>seq503
Length=635014
Score = 140 bits (154), Expect = 1e-30
Identities = 103/120 (86%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| ||||| |||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 517953 TGTTAGGACCGGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 518012
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||||| || |||||| ||| ||||||||||| ||||| | |||||| ||||||||
Sbjct 518013 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTACAGGGGCGA 518072
>seq9326
Length=218052
Score = 131 bits (144), Expect = 7e-28
Identities = 99/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| ||| || ||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct 150452 TGTTAGGATCCAAAACATGGTGAACTATGCCTGGGTGGGGTGAAGCCAGAGGAAACTCCA 150393
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680
|||||||| || |||||| ||||||||||||||| ||||| | |||||||| |||
Sbjct 150392 GTGGAGGCCCGTAGCGGTCCTGGCGTGCAAATCGGTCGTCCGACCTGGGTATATGGG 150336
>seq558
Length=2201001
Score = 107 bits (118), Expect = 8e-21
Identities = 97/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614
||||| | | || ||||| |||||||||||||||||||||| |||| ||||||||||
Sbjct 2169758 GAGCACACATATTAGGACCAGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAG 2169817
Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674
|||||||||||||| | | || ||| ||| |||||||||| || || | ||||||
Sbjct 2169818 GAAACTCTGGTGGAAGTCTGTAGTGGTCCTGACGTGCAAATCAGTCTTCTGACCTGGGTA 2169877
Query 675 TA 676
||
Sbjct 2169878 TA 2169879
>seq7884
Length=390159
Score = 104 bits (114), Expect = 1e-19
Identities = 90/112 (80%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
|||||||||||||||||||||||| ||| | |||| ||||||||||||||||||| ||||
Sbjct 342576 GGACCCGAAAGATGGTGAACTATGACTGGACAGGGCGAAGCCAGAGGAAACTCTGCTGGA 342635
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680
|| | ||| | ||| || | |||||| || || | ||| ||||||||
Sbjct 342636 GGTCCATAGCAGCCCTGACGGGTAAATCGGTCATCTGACCTGGTTATAGGGG 342687
>seq11639
Length=998625
Score = 75.2 bits (82), Expect = 5e-11
Identities = 55/64 (86%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626
|||||||||||| |||||||| ||| | || | |||| ||||| |||||||||||||||
Sbjct 986761 TGGGACCCGAAATATGGTGAAATATCCTTGGACAGGGATAAGCCTGAGGAAACTCTGGTG 986820
Query 627 GAGG 630
||||
Sbjct 986821 GAGG 986824
>seq9161
Length=1339885
Score = 75.2 bits (82), Expect = 5e-11
Identities = 73/94 (78%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 89 TAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAA 148
||| |||||||| ||| |||||||||||| ||||||| | | ||||| ||||||
Sbjct 853149 TAAGGCTAAATACCGGCAAGAGACCGATAGTCAACAAGTACCATAAGGGAAAGTTGAAAA 853208
Query 149 GCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAA 182
| |||||| | |||||||| || || |||||||
Sbjct 853209 GAACTTTGAAGAGAGAGTTCAAGAGGGCGTGAAA 853242
>seq8750
Length=1398474
Score = 75.2 bits (82), Expect = 5e-11
Identities = 62/76 (82%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629
||| | |||| ||||||| |||||||| ||| |||||||||||||||||||| |||||
Sbjct 624369 GACTCAAAAGTTGGTGAATTATGCCTGGGCAGGATGAAGCCAGAGGAAACTCTGATGGAG 624310
Query 630 GCTCGCAGCGGTTCTG 645
| || ||| || |||
Sbjct 624309 GTTCATAGCAGTCCTG 624294
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079634792300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |