Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq12372 149 3e-33 seq503 140 1e-30 seq9326 131 7e-28 seq558 107 8e-21 seq7884 104 1e-19 seq11639 75.2 5e-11 seq9161 75.2 5e-11 seq8750 75.2 5e-11 >seq12372 Length=1948381 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 1218947 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 1218888 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 1218887 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 1218828 >seq503 Length=635014 Score = 140 bits (154), Expect = 1e-30 Identities = 103/120 (86%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||| |||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 517953 TGTTAGGACCGGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 518012 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | |||||| |||||||| Sbjct 518013 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTACAGGGGCGA 518072 >seq9326 Length=218052 Score = 131 bits (144), Expect = 7e-28 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||| || ||| ||||||||||||||||| | ||||||||||||||||||||| Sbjct 150452 TGTTAGGATCCAAAACATGGTGAACTATGCCTGGGTGGGGTGAAGCCAGAGGAAACTCCA 150393 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 |||||||| || |||||| ||||||||||||||| ||||| | |||||||| ||| Sbjct 150392 GTGGAGGCCCGTAGCGGTCCTGGCGTGCAAATCGGTCGTCCGACCTGGGTATATGGG 150336 >seq558 Length=2201001 Score = 107 bits (118), Expect = 8e-21 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| | | || ||||| |||||||||||||||||||||| |||| |||||||||| Sbjct 2169758 GAGCACACATATTAGGACCAGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAG 2169817 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||| | | || ||| ||| |||||||||| || || | |||||| Sbjct 2169818 GAAACTCTGGTGGAAGTCTGTAGTGGTCCTGACGTGCAAATCAGTCTTCTGACCTGGGTA 2169877 Query 675 TA 676 || Sbjct 2169878 TA 2169879 >seq7884 Length=390159 Score = 104 bits (114), Expect = 1e-19 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||| ||| | |||| ||||||||||||||||||| |||| Sbjct 342576 GGACCCGAAAGATGGTGAACTATGACTGGACAGGGCGAAGCCAGAGGAAACTCTGCTGGA 342635 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 || | ||| | ||| || | |||||| || || | ||| |||||||| Sbjct 342636 GGTCCATAGCAGCCCTGACGGGTAAATCGGTCATCTGACCTGGTTATAGGGG 342687 >seq11639 Length=998625 Score = 75.2 bits (82), Expect = 5e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 |||||||||||| |||||||| ||| | || | |||| ||||| ||||||||||||||| Sbjct 986761 TGGGACCCGAAATATGGTGAAATATCCTTGGACAGGGATAAGCCTGAGGAAACTCTGGTG 986820 Query 627 GAGG 630 |||| Sbjct 986821 GAGG 986824 >seq9161 Length=1339885 Score = 75.2 bits (82), Expect = 5e-11 Identities = 73/94 (78%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 89 TAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAA 148 ||| |||||||| ||| |||||||||||| ||||||| | | ||||| |||||| Sbjct 853149 TAAGGCTAAATACCGGCAAGAGACCGATAGTCAACAAGTACCATAAGGGAAAGTTGAAAA 853208 Query 149 GCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAA 182 | |||||| | |||||||| || || ||||||| Sbjct 853209 GAACTTTGAAGAGAGAGTTCAAGAGGGCGTGAAA 853242 >seq8750 Length=1398474 Score = 75.2 bits (82), Expect = 5e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||| | |||| ||||||| |||||||| ||| |||||||||||||||||||| ||||| Sbjct 624369 GACTCAAAAGTTGGTGAATTATGCCTGGGCAGGATGAAGCCAGAGGAAACTCTGATGGAG 624310 Query 630 GCTCGCAGCGGTTCTG 645 | || ||| || ||| Sbjct 624309 GTTCATAGCAGTCCTG 624294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079634792300