Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq9583 212 1e-52 seq9395 203 6e-50 seq8052 194 3e-47 seq92 168 1e-39 seq1891 167 4e-39 seq10127 154 3e-35 seq11694 143 5e-32 seq3736 134 2e-29 seq12039 129 1e-27 seq6557 107 3e-21 seq10595 102 1e-19 seq8655 102 1e-19 seq8250 84.2 4e-14 seq4125 84.2 4e-14 seq10706 73.4 7e-11 >seq9583 Length=3335663 Score = 212 bits (234), Expect = 1e-52 Identities = 179/219 (82%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 76 AGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTAT 135 ||||||| ||| |||||||||||||||||| ||| |||| ||||| ||||| || Sbjct 1392233 AGCTCACATTCTTTATTAGTGGGTGAACAATTCAATGCTTGGTGAATTTGGCTTCACAAT 1392292 Query 136 GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCC 195 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 1392293 GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCC 1392352 Query 196 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGAC 255 |||||||||||||||||||||||||||||||| ||| || | || ||| | | | | Sbjct 1392353 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACTTCCTG-CTTAAACCCCAAAAGTC 1392411 Query 256 TAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 |||||| | ||||| | ||||| || ||| |||| Sbjct 1392412 AGAAGGATTGTGAGGCCCCCTTTTCACAGTCTGTGTTCA 1392450 >seq9395 Length=1316551 Score = 203 bits (224), Expect = 6e-50 Identities = 203/263 (77%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| ||||| |||||| | |||| |||||| | |||||| |||| ||||| |||| | Sbjct 720760 TCATTAGTAGAGTAAAATTTACCTATCTCATAGCAGTCTAAGCCCAACTCACATTCCATG 720701 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||| |||||||||||||| ||| |||| |||| || ||||||||||||| || Sbjct 720700 TTAGTGAGTGAACAATCCAACACTTGGTGAATCCTGCCTCTCAGTGATAGGAAGAGCTGA 720641 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 || |||||||||||| || | ||| |||| |||| || ||||||||||||||||| Sbjct 720640 CA----AGGATCAAAAAGTGACATTGCTGTGAATGCTTAGCCACCACAAGCCAGTTATCC 720585 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||| || |||||||| ||| || || | ||| | | || | |||||||| ||| Sbjct 720584 CTGTGTTAGCTTTTCTGACACTTCCTGCTTAAAACCCCAAAGGTCAGAAGGATCGTGAGG 720525 Query 271 CCACACTTTCATGGTTTGTATTC 293 || | |||||| ||| ||||||| Sbjct 720524 CCCCGCTTTCACGGTCTGTATTC 720502 >seq8052 Length=356272 Score = 194 bits (214), Expect = 3e-47 Identities = 145/169 (86%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||| ||| ||||||||||||| |||||||||||| |||||||| ||||||| Sbjct 53668 TCATCAGTAGGGGAAA-CTAACCTGTCTCAAGACGGTCTAAACACAGCTCACATTCCCTA 53610 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||| ||||||||||| |||| |||||||||||| ||| |||||||||| | Sbjct 53609 TTAGTGGATGAACAATCCAGTGCTTGGTGAATTCTGCTTCACAATGGTAGGAAGAGCTCA 53550 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAA 199 ||| |||||||||||| ||||| ||||| |||| ||||||| | ||||| Sbjct 53549 CATTGAAGGATCAAAAGGCAACATCGCTGTGAATGCTTGGCCGTCACAA 53501 >seq92 Length=650051 Score = 168 bits (186), Expect = 1e-39 Identities = 139/168 (83%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || | | ||||||||||| ||||||||||| Sbjct 314 TACTGAGCAGGATTACCATGACGACAACACATTACCAGTAGGGTAAGCGTAACCTGTCTC 255 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||| ||||||||||||||||||||||||| |||||||||| |||||||| | Sbjct 254 AGGACGGTCCAAACCCAGCTCACGTTCCCTATTAGGGGGTGAACAAGTCAACGCTTGGTG 195 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAA 167 ||||||||||| |||||||||||||| |||||| |||||||||||| Sbjct 194 AATTCTGCTTCACAATGATAGGAAGAGCTGACATCAAAGGATCAAAAA 147 >seq1891 Length=2088598 Score = 167 bits (184), Expect = 4e-39 Identities = 216/294 (73%), Gaps = 7/294 (2%) Strand=Plus/Minus Query 2 ACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | | |||||||| | | || ||| ||||||||| |||||||||||| || Sbjct 1828316 ACTAATCAGCATTACCATGGCAACAACATATCAACAGTAGGGTGAAACTAACCTGTTTCT 1828257 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 || || || ||||||||| ||| ||||| | ||||||||||| || || || Sbjct 1828256 CCACAGTGAAATTCCAGCTCACATTCTCTATTCG--GGTGAACAATCTGACCGTTGATGA 1828199 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||| |||||| ||||| |||||| ||||||| | || || |||| | ||||||| Sbjct 1828198 ATTGTGCTTCACAGTGATA---AGAGCCAACATCGA-GAATGGAAGAGCAGCATCGCTAT 1828143 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||| |||||||||| |||| ||||||| ||| |||||||| ||||| || ||| | | | Sbjct 1828142 GAATACTTGGCTGCCCCAAGTCAGTTATGCCTCTGGTAACTCTTCTGACATCTCCAACTT 1828083 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 |||| | || | |||||| |||| |||||||||||| |||||||| Sbjct 1828082 AAAATGCAAAAGGTCAGCAGGATCACAAGGCTCCACTTTCATGGTCTGTATTCA 1828029 >seq10127 Length=1177402 Score = 154 bits (170), Expect = 3e-35 Identities = 130/159 (82%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 |||||||||||||| ||||| ||||||||||||| | |||||||||| ||||||| | Sbjct 104323 ATGATAGGAAGAGCTGACATT--AGGATCAAAAAGCGATCTCGCTATGAATGCTTGGCCG 104380 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGG 253 |||||| ||||||||||||||||||||||||||| |||||| || | ||| | | || Sbjct 104381 CCACAATCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAGG 104440 Query 254 ACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | |||||||| ||||| |||||||||| |||||| Sbjct 104441 TCAGAAGGATCGTGAGGCCCTGCTTTCATGGTCTGTATT 104479 >seq11694 Length=2874014 Score = 143 bits (158), Expect = 5e-32 Identities = 96/107 (90%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||| ||| ||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 2873054 GAATTCTGTTTCACAGTGATAGGAAGAGCTGACATCGAAGGATCAAAAAGCGACGTCGCT 2873113 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225 ||||||||||||| ||||||| ||||| ||||||| ||||||||||| Sbjct 2873114 ATGAACGCTTGGCCGCCACAAACCAGTCATCCCTGCGGTAACTTTTC 2873160 >seq3736 Length=510419 Score = 134 bits (148), Expect = 2e-29 Identities = 139/179 (78%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCC--GACATCGAAGGATCAAAAAGCA--ACGT 174 |||||||||||| ||||||||||||| ||||||||||||||| ||||| |||| Sbjct 434039 GAATTCTGCTTCACAATGATAGGAAGAGATAGGACATCGAAGGATCAGAAAGCCCGACGT 433980 Query 175 CGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 | | ||||| ||||||| || ||||||| ||||||||||||||||| |||| | |||||| Sbjct 433979 CACCATGAATGCTTGGCCGCAACAAGCCGGTTATCCCTGTGGTAAC-TTTCCGACACCTC 433921 Query 235 TAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || | ||| ||| || | |||| ||| ||||| |||||| || ||||||| Sbjct 433920 CTGCTTAAAACCACGAAGGTCAGAAGGGTCGGGAGGCCCTGCTTTCACCGTCTGTATTC 433862 >seq12039 Length=961756 Score = 129 bits (142), Expect = 1e-27 Identities = 94/109 (86%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| || ||||||||||| |||||| ||||||||||||||| | | || Sbjct 45173 GAATTCTGCTTCACAATTATAGGAAGAGCTGACATCCAAGGATCAAAAAGCAGCATGACT 45114 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 |||||| |||||| |||||| |||| |||||||||||||||||||||| Sbjct 45113 ATGAACACTTGGCCACCACAACCCAGATATCCCTGTGGTAACTTTTCTG 45065 >seq6557 Length=1776612 Score = 107 bits (118), Expect = 3e-21 Identities = 94/116 (81%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||| |||||||||||||||||||||||| | ||||| |||||||||||||||||| Sbjct 356349 TCATCGGTAGGGTAAAACTAACCTGTCTCACAGCAGTCTAGACCCAGCTCACGTTCCCTG 356408 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 |||||||||||||| | | |||| || |||| || ||| ||| |||| ||| Sbjct 356409 TTAGTGGGTGAACAGACAGATGCTTGGTGAGTTCTTCTCTGGT-TGAGAGGATGAG 356463 >seq10595 Length=1192729 Score = 102 bits (112), Expect = 1e-19 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||| |||||||||||||||||| |||||||| |||||| |||||||||| |||| || Sbjct 513624 TCATCTGTAGGGTAAAACTAACCTTTCTCATGATGGTCTATACCCAGCTCATGTTCTCTT 513683 Query 91 TTAGTGGGTGAACAAT 106 ||||||||||||| || Sbjct 513684 TTAGTGGGTGAACCAT 513699 >seq8655 Length=257000 Score = 102 bits (112), Expect = 1e-19 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 76 AGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTAT 135 |||||||||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 141313 AGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAAT 141372 Query 136 GATAGGAAGAG 146 ||||||||||| Sbjct 141373 GATAGGAAGAG 141383 >seq8250 Length=3759826 Score = 84.2 bits (92), Expect = 4e-14 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 145 AGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG 204 ||| ||||| |||| || ||||| ||| ||| ||||||| ||||| ||| ||| || || Sbjct 3225531 AGCTGACATTGAAGCATTAAAAAACAATGTCACTATGAAAGCTTGACTGACACCAGTCAT 3225472 Query 205 TTATCCCTGTGGTAACTTTTCTGGCACCTC 234 ||| ||||||||||| |||||| |||||| Sbjct 3225471 TTACCCCTGTGGTAA--TTTCTGACACCTC 3225444 >seq4125 Length=494924 Score = 84.2 bits (92), Expect = 4e-14 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||||||| ||||||||||||| |||| |||||||||||| |||||||||||||| | Sbjct 21447 ATTAGTGTGTGAACAATCCAATGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTG 21388 Query 150 ACATCGAAGGATCA 163 || || |||||||| Sbjct 21387 ACGTCAAAGGATCA 21374 >seq10706 Length=1111007 Score = 73.4 bits (80), Expect = 7e-11 Identities = 125/180 (69%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||| ||||||| | | ||||| | | || | |||| |||| ||| || Sbjct 148091 TCATCAGTAGGATAAAACTGTCTTATCTCACAATGACCTGATCCCACTTCACATTCTTTA 148150 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||| |||||| || ||| || || | || ||| ||| | ||| | | Sbjct 148151 TTAGTGAATGAACAGTCAAACACTGGATGAGGTGTGTTTCACAATG--AAGAATA----A 148204 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| |||||| |||||||| | ||| ||||| ||| || ||||| |||||||||| Sbjct 148205 TATCTAAGGATTAAAAAGCAGAATTGCTTTGAACACTTAGCCCCCACATTCCAGTTATCC 148264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854254529856