Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq9583 212 1e-52
seq9395 203 6e-50
seq8052 194 3e-47
seq92 168 1e-39
seq1891 167 4e-39
seq10127 154 3e-35
seq11694 143 5e-32
seq3736 134 2e-29
seq12039 129 1e-27
seq6557 107 3e-21
seq10595 102 1e-19
seq8655 102 1e-19
seq8250 84.2 4e-14
seq4125 84.2 4e-14
seq10706 73.4 7e-11
>seq9583
Length=3335663
Score = 212 bits (234), Expect = 1e-52
Identities = 179/219 (82%), Gaps = 1/219 (0%)
Strand=Plus/Plus
Query 76 AGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTAT 135
||||||| ||| |||||||||||||||||| ||| |||| ||||| ||||| ||
Sbjct 1392233 AGCTCACATTCTTTATTAGTGGGTGAACAATTCAATGCTTGGTGAATTTGGCTTCACAAT 1392292
Query 136 GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCC 195
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1392293 GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCC 1392352
Query 196 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGAC 255
|||||||||||||||||||||||||||||||| ||| || | || ||| | | | |
Sbjct 1392353 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACTTCCTG-CTTAAACCCCAAAAGTC 1392411
Query 256 TAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
|||||| | ||||| | ||||| || ||| ||||
Sbjct 1392412 AGAAGGATTGTGAGGCCCCCTTTTCACAGTCTGTGTTCA 1392450
>seq9395
Length=1316551
Score = 203 bits (224), Expect = 6e-50
Identities = 203/263 (77%), Gaps = 4/263 (2%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||| ||||| |||||| | |||| |||||| | |||||| |||| ||||| |||| |
Sbjct 720760 TCATTAGTAGAGTAAAATTTACCTATCTCATAGCAGTCTAAGCCCAACTCACATTCCATG 720701
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|||||| |||||||||||||| ||| |||| |||| || ||||||||||||| ||
Sbjct 720700 TTAGTGAGTGAACAATCCAACACTTGGTGAATCCTGCCTCTCAGTGATAGGAAGAGCTGA 720641
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
|| |||||||||||| || | ||| |||| |||| || |||||||||||||||||
Sbjct 720640 CA----AGGATCAAAAAGTGACATTGCTGTGAATGCTTAGCCACCACAAGCCAGTTATCC 720585
Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270
||||| || |||||||| ||| || || | ||| | | || | |||||||| |||
Sbjct 720584 CTGTGTTAGCTTTTCTGACACTTCCTGCTTAAAACCCCAAAGGTCAGAAGGATCGTGAGG 720525
Query 271 CCACACTTTCATGGTTTGTATTC 293
|| | |||||| ||| |||||||
Sbjct 720524 CCCCGCTTTCACGGTCTGTATTC 720502
>seq8052
Length=356272
Score = 194 bits (214), Expect = 3e-47
Identities = 145/169 (86%), Gaps = 1/169 (1%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||| ||| ||||||||||||| |||||||||||| |||||||| |||||||
Sbjct 53668 TCATCAGTAGGGGAAA-CTAACCTGTCTCAAGACGGTCTAAACACAGCTCACATTCCCTA 53610
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||| ||||||||||| |||| |||||||||||| ||| |||||||||| |
Sbjct 53609 TTAGTGGATGAACAATCCAGTGCTTGGTGAATTCTGCTTCACAATGGTAGGAAGAGCTCA 53550
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAA 199
||| |||||||||||| ||||| ||||| |||| ||||||| | |||||
Sbjct 53549 CATTGAAGGATCAAAAGGCAACATCGCTGTGAATGCTTGGCCGTCACAA 53501
>seq92
Length=650051
Score = 168 bits (186), Expect = 1e-39
Identities = 139/168 (83%), Gaps = 1/168 (1%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| | | || | | ||||||||||| |||||||||||
Sbjct 314 TACTGAGCAGGATTACCATGACGACAACACATTACCAGTAGGGTAAGCGTAACCTGTCTC 255
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| ||||||| ||||||||||||||||||||||||| |||||||||| |||||||| |
Sbjct 254 AGGACGGTCCAAACCCAGCTCACGTTCCCTATTAGGGGGTGAACAAGTCAACGCTTGGTG 195
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAA 167
||||||||||| |||||||||||||| |||||| ||||||||||||
Sbjct 194 AATTCTGCTTCACAATGATAGGAAGAGCTGACATCAAAGGATCAAAAA 147
>seq1891
Length=2088598
Score = 167 bits (184), Expect = 4e-39
Identities = 216/294 (73%), Gaps = 7/294 (2%)
Strand=Plus/Minus
Query 2 ACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | | |||||||| | | || ||| ||||||||| |||||||||||| ||
Sbjct 1828316 ACTAATCAGCATTACCATGGCAACAACATATCAACAGTAGGGTGAAACTAACCTGTTTCT 1828257
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|| || || ||||||||| ||| ||||| | ||||||||||| || || ||
Sbjct 1828256 CCACAGTGAAATTCCAGCTCACATTCTCTATTCG--GGTGAACAATCTGACCGTTGATGA 1828199
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
||| |||||| ||||| |||||| ||||||| | || || |||| | |||||||
Sbjct 1828198 ATTGTGCTTCACAGTGATA---AGAGCCAACATCGA-GAATGGAAGAGCAGCATCGCTAT 1828143
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||| |||||||||| |||| ||||||| ||| |||||||| ||||| || ||| | | |
Sbjct 1828142 GAATACTTGGCTGCCCCAAGTCAGTTATGCCTCTGGTAACTCTTCTGACATCTCCAACTT 1828083
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
|||| | || | |||||| |||| |||||||||||| ||||||||
Sbjct 1828082 AAAATGCAAAAGGTCAGCAGGATCACAAGGCTCCACTTTCATGGTCTGTATTCA 1828029
>seq10127
Length=1177402
Score = 154 bits (170), Expect = 3e-35
Identities = 130/159 (82%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193
|||||||||||||| ||||| ||||||||||||| | |||||||||| ||||||| |
Sbjct 104323 ATGATAGGAAGAGCTGACATT--AGGATCAAAAAGCGATCTCGCTATGAATGCTTGGCCG 104380
Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGG 253
|||||| ||||||||||||||||||||||||||| |||||| || | ||| | | ||
Sbjct 104381 CCACAATCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAGG 104440
Query 254 ACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292
| |||||||| ||||| |||||||||| ||||||
Sbjct 104441 TCAGAAGGATCGTGAGGCCCTGCTTTCATGGTCTGTATT 104479
>seq11694
Length=2874014
Score = 143 bits (158), Expect = 5e-32
Identities = 96/107 (90%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178
|||||||| ||| ||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 2873054 GAATTCTGTTTCACAGTGATAGGAAGAGCTGACATCGAAGGATCAAAAAGCGACGTCGCT 2873113
Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225
||||||||||||| ||||||| ||||| ||||||| |||||||||||
Sbjct 2873114 ATGAACGCTTGGCCGCCACAAACCAGTCATCCCTGCGGTAACTTTTC 2873160
>seq3736
Length=510419
Score = 134 bits (148), Expect = 2e-29
Identities = 139/179 (78%), Gaps = 5/179 (3%)
Strand=Plus/Minus
Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCC--GACATCGAAGGATCAAAAAGCA--ACGT 174
|||||||||||| ||||||||||||| ||||||||||||||| ||||| ||||
Sbjct 434039 GAATTCTGCTTCACAATGATAGGAAGAGATAGGACATCGAAGGATCAGAAAGCCCGACGT 433980
Query 175 CGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234
| | ||||| ||||||| || ||||||| ||||||||||||||||| |||| | ||||||
Sbjct 433979 CACCATGAATGCTTGGCCGCAACAAGCCGGTTATCCCTGTGGTAAC-TTTCCGACACCTC 433921
Query 235 TAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|| | ||| ||| || | |||| ||| ||||| |||||| || |||||||
Sbjct 433920 CTGCTTAAAACCACGAAGGTCAGAAGGGTCGGGAGGCCCTGCTTTCACCGTCTGTATTC 433862
>seq12039
Length=961756
Score = 129 bits (142), Expect = 1e-27
Identities = 94/109 (86%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178
|||||||||||| || ||||||||||| |||||| ||||||||||||||| | | ||
Sbjct 45173 GAATTCTGCTTCACAATTATAGGAAGAGCTGACATCCAAGGATCAAAAAGCAGCATGACT 45114
Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227
|||||| |||||| |||||| |||| ||||||||||||||||||||||
Sbjct 45113 ATGAACACTTGGCCACCACAACCCAGATATCCCTGTGGTAACTTTTCTG 45065
>seq6557
Length=1776612
Score = 107 bits (118), Expect = 3e-21
Identities = 94/116 (81%), Gaps = 1/116 (1%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||| |||||||||||||||||||||||| | ||||| ||||||||||||||||||
Sbjct 356349 TCATCGGTAGGGTAAAACTAACCTGTCTCACAGCAGTCTAGACCCAGCTCACGTTCCCTG 356408
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146
|||||||||||||| | | |||| || |||| || ||| ||| |||| |||
Sbjct 356409 TTAGTGGGTGAACAGACAGATGCTTGGTGAGTTCTTCTCTGGT-TGAGAGGATGAG 356463
>seq10595
Length=1192729
Score = 102 bits (112), Expect = 1e-19
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||| |||||||||||||||||| |||||||| |||||| |||||||||| |||| ||
Sbjct 513624 TCATCTGTAGGGTAAAACTAACCTTTCTCATGATGGTCTATACCCAGCTCATGTTCTCTT 513683
Query 91 TTAGTGGGTGAACAAT 106
||||||||||||| ||
Sbjct 513684 TTAGTGGGTGAACCAT 513699
>seq8655
Length=257000
Score = 102 bits (112), Expect = 1e-19
Identities = 65/71 (92%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 76 AGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTAT 135
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 141313 AGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAAT 141372
Query 136 GATAGGAAGAG 146
|||||||||||
Sbjct 141373 GATAGGAAGAG 141383
>seq8250
Length=3759826
Score = 84.2 bits (92), Expect = 4e-14
Identities = 73/90 (81%), Gaps = 2/90 (2%)
Strand=Plus/Minus
Query 145 AGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG 204
||| ||||| |||| || ||||| ||| ||| ||||||| ||||| ||| ||| || ||
Sbjct 3225531 AGCTGACATTGAAGCATTAAAAAACAATGTCACTATGAAAGCTTGACTGACACCAGTCAT 3225472
Query 205 TTATCCCTGTGGTAACTTTTCTGGCACCTC 234
||| ||||||||||| |||||| ||||||
Sbjct 3225471 TTACCCCTGTGGTAA--TTTCTGACACCTC 3225444
>seq4125
Length=494924
Score = 84.2 bits (92), Expect = 4e-14
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
||||||| ||||||||||||| |||| |||||||||||| |||||||||||||| |
Sbjct 21447 ATTAGTGTGTGAACAATCCAATGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTG 21388
Query 150 ACATCGAAGGATCA 163
|| || ||||||||
Sbjct 21387 ACGTCAAAGGATCA 21374
>seq10706
Length=1111007
Score = 73.4 bits (80), Expect = 7e-11
Identities = 125/180 (69%), Gaps = 6/180 (3%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||||||||| ||||||| | | ||||| | | || | |||| |||| ||| ||
Sbjct 148091 TCATCAGTAGGATAAAACTGTCTTATCTCACAATGACCTGATCCCACTTCACATTCTTTA 148150
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|||||| |||||| || ||| || || | || ||| ||| | ||| | |
Sbjct 148151 TTAGTGAATGAACAGTCAAACACTGGATGAGGTGTGTTTCACAATG--AAGAATA----A 148204
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
||| |||||| |||||||| | ||| ||||| ||| || ||||| ||||||||||
Sbjct 148205 TATCTAAGGATTAAAAAGCAGAATTGCTTTGAACACTTAGCCCCCACATTCCAGTTATCC 148264
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854254529856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |