Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2002 168 1e-39 seq16205 78.8 2e-12 seq14939 78.8 2e-12 >seq2002 Length=2058770 Score = 168 bits (186), Expect = 1e-39 Identities = 172/223 (77%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| ||||||||||||| Sbjct 252751 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTAC 252693 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 |||||| | || || || | | ||| ||||| ||| ||||||| | | || | Sbjct 252692 ACTGACTGGCTCATCGTGTGCCTACCCTATGCCGGCAGGCGTGGGTAACCCGTTGAACCC 252633 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | ||||| | ||||| | | |||||||||||| | | | ||||||||| || |||||| Sbjct 252632 CATTCGTGATAGGGATTGGGGATTGCAATTATTCCACATGAACGAGGAACTCCCAGTAAG 252573 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || || | ||| ||||||||| |||||||||||||||| Sbjct 252572 TGCAGGTTGTAAGCTTACGTTGATTAAGTCCCTGCCCTTTGTA 252530 >seq16205 Length=694624 Score = 78.8 bits (86), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 4/131 (3%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||||||||| | |||| |||| | ||||| ||||| | Sbjct 316959 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACATGTGCTACTCTGACTG 316900 Query 174 AG--CCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCT-GTC 230 | || | || | | ||| ||| | | || ||||||| || ||| ||| || | Sbjct 316899 GGGCTCAGCATGTGCCTACCCTATGCCAGCAAGTGTGGGTAA-CTAGTTGAACCCTCTTT 316841 Query 231 GTGCTGGGGAT 241 ||| ||||||| Sbjct 316840 GTGATGGGGAT 316830 >seq14939 Length=758924 Score = 78.8 bits (86), Expect = 2e-12 Identities = 153/224 (68%), Gaps = 13/224 (6%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||||||||| ||||||| |||| | | || ||||| Sbjct 10339 AGATTGAG-CAATAACAGGTCT----------TAGATGTCGAGGGCTGTAAGCATGCTAC 10291 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 || ||| | ||| | || | | ||| ||| | ||| ||||| || | |||| Sbjct 10290 ACCGACTGGCTCAATGTGTGCCTACCCTATGCCTGCAGGCACAGGTAACCTGTTGAAACC 10231 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTC-AACGAGGAATGCCTAGTAA 284 | | || ||||||| | |||||||||||| ||| | || ||||||| || | ||| Sbjct 10230 CATTTGTAATGGGGATCAGGGATTGCAATTATT-CTCCACGAATGAGGAATTCCCACTAA 10172 Query 285 GCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | || | | | ||| | |||||||| |||||||||||||||| Sbjct 10171 GTACGGGCCGTAAGCTTGTGTTGATTAAGTCCCTGCCCTTTGTA 10128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947038729728