Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq2002 168 1e-39
seq16205 78.8 2e-12
seq14939 78.8 2e-12
>seq2002
Length=2058770
Score = 168 bits (186), Expect = 1e-39
Identities = 172/223 (77%), Gaps = 1/223 (0%)
Strand=Plus/Minus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| |||||||||||||||||||||||||||||| | |||| |||||||||||||
Sbjct 252751 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTAC 252693
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
|||||| | || || || | | ||| ||||| ||| ||||||| | | || |
Sbjct 252692 ACTGACTGGCTCATCGTGTGCCTACCCTATGCCGGCAGGCGTGGGTAACCCGTTGAACCC 252633
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285
| ||||| | ||||| | | |||||||||||| | | | ||||||||| || ||||||
Sbjct 252632 CATTCGTGATAGGGATTGGGGATTGCAATTATTCCACATGAACGAGGAACTCCCAGTAAG 252573
Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
|| || | ||| ||||||||| ||||||||||||||||
Sbjct 252572 TGCAGGTTGTAAGCTTACGTTGATTAAGTCCCTGCCCTTTGTA 252530
>seq16205
Length=694624
Score = 78.8 bits (86), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 4/131 (3%)
Strand=Plus/Minus
Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173
||||||||||||||||||||||||||||||| | |||| |||| | ||||| ||||| |
Sbjct 316959 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACATGTGCTACTCTGACTG 316900
Query 174 AG--CCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCT-GTC 230
| || | || | | ||| ||| | | || ||||||| || ||| ||| || |
Sbjct 316899 GGGCTCAGCATGTGCCTACCCTATGCCAGCAAGTGTGGGTAA-CTAGTTGAACCCTCTTT 316841
Query 231 GTGCTGGGGAT 241
||| |||||||
Sbjct 316840 GTGATGGGGAT 316830
>seq14939
Length=758924
Score = 78.8 bits (86), Expect = 2e-12
Identities = 153/224 (68%), Gaps = 13/224 (6%)
Strand=Plus/Minus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| ||||||||||||| ||||||| |||| | | || |||||
Sbjct 10339 AGATTGAG-CAATAACAGGTCT----------TAGATGTCGAGGGCTGTAAGCATGCTAC 10291
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
|| ||| | ||| | || | | ||| ||| | ||| ||||| || | ||||
Sbjct 10290 ACCGACTGGCTCAATGTGTGCCTACCCTATGCCTGCAGGCACAGGTAACCTGTTGAAACC 10231
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTC-AACGAGGAATGCCTAGTAA 284
| | || ||||||| | |||||||||||| ||| | || ||||||| || | |||
Sbjct 10230 CATTTGTAATGGGGATCAGGGATTGCAATTATT-CTCCACGAATGAGGAATTCCCACTAA 10172
Query 285 GCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| || | | | ||| | |||||||| ||||||||||||||||
Sbjct 10171 GTACGGGCCGTAAGCTTGTGTTGATTAAGTCCCTGCCCTTTGTA 10128
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947038729728
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |