Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1947 100 5e-19 seq9054 89.7 8e-16 seq6891 86.0 1e-14 seq13205 80.6 4e-13 seq10028 77.0 5e-12 seq11484 73.4 6e-11 seq92 73.4 6e-11 >seq1947 Length=646205 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||| ||| | |||||| ||||| | || | || |||| || |||| Sbjct 590940 GTACGAGAGGAATCGCAGG-TTCAGACGT-TTGGTGTATGTGCTTGGCTGAGGAGCCAGT 590997 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 590998 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 591051 >seq9054 Length=394746 Score = 89.7 bits (98), Expect = 8e-16 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | || | ||||||| || || || |||||||||||||||| |||||||| Sbjct 122981 TTGGTGTATGTGCTTGTCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGA 123040 Query 91 CTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||||||||||| Sbjct 123041 CTGAACGCCTCTAAGTCAGAATCC 123064 >seq6891 Length=1773607 Score = 86.0 bits (94), Expect = 1e-14 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || ||||| |||||||||||||||| |||||||| |||||||||||||| Sbjct 1652904 TGGCTGAGGAGCCAGTGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAA 1652963 Query 105 GTCAGAATCC 114 |||||||||| Sbjct 1652964 GTCAGAATCC 1652973 >seq13205 Length=890333 Score = 80.6 bits (88), Expect = 4e-13 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | || | || |||| || | || |||||||||||||||| |||||||| Sbjct 120248 TTGGTGTATGTGCTTGGCTGAGGAGCAAATGGGGCGAAGCTACCATCTGTGGGATTATGA 120307 Query 91 CTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||||||||||| Sbjct 120308 CTGAACGCCTCTAAGTCAGAATCC 120331 >seq10028 Length=1203692 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||| |||| |||||| | ||||| | || | || |||| | || | Sbjct 532275 GTAGGAGAGGAACTGCGGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGGGTCAAT 532332 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | ||||||||||||| |||||||| ||||| ||||| |||||||||||| Sbjct 532333 GGGTCAAAGCTACCATCTGTGGGATTATGACTGAATGCCTCCAAGTCAGAATCC 532386 >seq11484 Length=1079061 Score = 73.4 bits (80), Expect = 6e-11 Identities = 60/72 (83%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 48 CTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107 |||| || || || |||||||||||||||| || ||||| |||||| |||||||||| Sbjct 1061448 CTGAGGAGCCAATGGAGCGAAGCTACCATCTGTGGGGTTATGACTGAACACCTCTAAGTC 1061507 Query 108 AGAATCCATGCC 119 ||||||| |||| Sbjct 1061508 AGAATCC-TGCC 1061518 >seq92 Length=650051 Score = 73.4 bits (80), Expect = 6e-11 Identities = 90/119 (76%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||| ||||||| | ||||| | ||||| | || | || |||| || || | Sbjct 312 GTACAAGAAGAACCGCAGG-TTCAGGC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 369 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 | |||||||||||||||| |||||||| || | | |||||||||||||||| |||| Sbjct 370 GGGGCGAAGCTACCATCTGTGGGATTATGACTAAGTGACTCTAAGTCAGAATCC-TGCC 427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819064881664