Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq1947 100 5e-19
seq9054 89.7 8e-16
seq6891 86.0 1e-14
seq13205 80.6 4e-13
seq10028 77.0 5e-12
seq11484 73.4 6e-11
seq92 73.4 6e-11
>seq1947
Length=646205
Score = 100 bits (110), Expect = 5e-19
Identities = 92/114 (81%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||| ||| | |||||| ||||| | || | || |||| || ||||
Sbjct 590940 GTACGAGAGGAATCGCAGG-TTCAGACGT-TTGGTGTATGTGCTTGGCTGAGGAGCCAGT 590997
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 590998 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 591051
>seq9054
Length=394746
Score = 89.7 bits (98), Expect = 8e-16
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90
||||| | || | ||||||| || || || |||||||||||||||| ||||||||
Sbjct 122981 TTGGTGTATGTGCTTGTCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGA 123040
Query 91 CTGAACGCCTCTAAGTCAGAATCC 114
||||||||||||||||||||||||
Sbjct 123041 CTGAACGCCTCTAAGTCAGAATCC 123064
>seq6891
Length=1773607
Score = 86.0 bits (94), Expect = 1e-14
Identities = 61/70 (87%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104
|| |||| || ||||| |||||||||||||||| |||||||| ||||||||||||||
Sbjct 1652904 TGGCTGAGGAGCCAGTGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAA 1652963
Query 105 GTCAGAATCC 114
||||||||||
Sbjct 1652964 GTCAGAATCC 1652973
>seq13205
Length=890333
Score = 80.6 bits (88), Expect = 4e-13
Identities = 68/84 (81%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90
||||| | || | || |||| || | || |||||||||||||||| ||||||||
Sbjct 120248 TTGGTGTATGTGCTTGGCTGAGGAGCAAATGGGGCGAAGCTACCATCTGTGGGATTATGA 120307
Query 91 CTGAACGCCTCTAAGTCAGAATCC 114
||||||||||||||||||||||||
Sbjct 120308 CTGAACGCCTCTAAGTCAGAATCC 120331
>seq10028
Length=1203692
Score = 77.0 bits (84), Expect = 5e-12
Identities = 87/114 (76%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||||||| |||| |||||| | ||||| | || | || |||| | || |
Sbjct 532275 GTAGGAGAGGAACTGCGGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGGGTCAAT 532332
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| | ||||||||||||| |||||||| ||||| ||||| ||||||||||||
Sbjct 532333 GGGTCAAAGCTACCATCTGTGGGATTATGACTGAATGCCTCCAAGTCAGAATCC 532386
>seq11484
Length=1079061
Score = 73.4 bits (80), Expect = 6e-11
Identities = 60/72 (83%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 48 CTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107
|||| || || || |||||||||||||||| || ||||| |||||| ||||||||||
Sbjct 1061448 CTGAGGAGCCAATGGAGCGAAGCTACCATCTGTGGGGTTATGACTGAACACCTCTAAGTC 1061507
Query 108 AGAATCCATGCC 119
||||||| ||||
Sbjct 1061508 AGAATCC-TGCC 1061518
>seq92
Length=650051
Score = 73.4 bits (80), Expect = 6e-11
Identities = 90/119 (76%), Gaps = 3/119 (3%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||| ||| ||||||| | ||||| | ||||| | || | || |||| || || |
Sbjct 312 GTACAAGAAGAACCGCAGG-TTCAGGC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 369
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119
| |||||||||||||||| |||||||| || | | |||||||||||||||| ||||
Sbjct 370 GGGGCGAAGCTACCATCTGTGGGATTATGACTAAGTGACTCTAAGTCAGAATCC-TGCC 427
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819064881664
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |