Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq9249 179 1e-42 seq7833 123 8e-26 seq13850 104 7e-20 seq5557 98.7 3e-18 seq12083 95.1 4e-17 seq8390 91.5 4e-16 seq9728 89.7 2e-15 seq9161 87.8 5e-15 seq9227 84.2 7e-14 seq9303 82.4 2e-13 seq7966 80.6 8e-13 seq10506 78.8 3e-12 seq9107 78.8 3e-12 seq8861 78.8 3e-12 seq16915 77.0 1e-11 seq15471 77.0 1e-11 >seq9249 Length=5680458 Score = 179 bits (198), Expect = 1e-42 Identities = 176/221 (80%), Gaps = 7/221 (3%) Strand=Plus/Plus Query 8 TTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGT 66 ||||||||||| | | ||||| ||||||| ||||| | |||||||| |||| | Sbjct 2444855 TTCCAATTACAGGGTCTTGAAAGAATCCTGTATTGTTATTTTTCATCACTACCGCCCCAT 2444914 Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 ||||| ||| ||| |||| | ||||||||||||||||||||||||||| |||||||| Sbjct 2444915 --CGGGAGTGGATAACTTGCACATCTGCTGCCTTCCTTGGATGTGGTAGCCATTTCTCAG 2444972 Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC-CA 185 |||||||||| ||||||||||||||||||||| | |||| | | |||| | ||||| || Sbjct 2444973 GCTCCCTCTCTGGAATCGAACCCTAATTCCCCATCACCCATGGTCACCAAGATAGGCACA 2445032 Query 186 CT-ATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAAT 225 | ||| ||||| | ||||||||| || ||| ||| |||| Sbjct 2445033 GTGATC--ACCATTGCAAGTTGATAAGGTAGACATTCGAAT 2445071 >seq7833 Length=396958 Score = 123 bits (136), Expect = 8e-26 Identities = 90/104 (87%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 34 CTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTG 93 |||||| ||||| ||||||||||||||| | ||| ||| |||||||||||| ||||| Sbjct 212668 CTGTAT---TATTTTTTGTCACTACCTCCCTGGGTCAGGAGTGGGTAATTTGCCTGCCTG 212724 Query 94 CTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC 137 |||||||||||| | ||||||| ||| ||||||||||||||||| Sbjct 212725 CTGCCTTCCTTGAAGGTGGTAGTCGTGTCTCAGGCTCCCTCTCC 212768 >seq13850 Length=821301 Score = 104 bits (114), Expect = 7e-20 Identities = 121/156 (78%), Gaps = 12/156 (8%) Strand=Plus/Plus Query 356 TCTAGAATTACCACGGTTAT----CCATGTAGTAAGGT-ACT-ATCAAATAAACGATAAC 409 ||||||||||||| ||||| ||| |||| | || | | | |||| ||| ||||| Sbjct 369536 TCTAGAATTACCA--GTTATTTAACCAAGTAGAAGAGTGAGTGACCAAAGGAACCATAAC 369593 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATG 468 ||||||||||||| || | |||||||||||| || || | |||||||||||||| Sbjct 369594 TGATTTAATGAGCAATCCATAGTTTCACTGTACCAGCCTG--TGCACTTAGACATGCATA 369651 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | |||||||||||||||||||| || || || |||| Sbjct 369652 GTTTAATCTTTGAGACAAGCATGTG-CTGCTAGCAG 369686 >seq5557 Length=4022550 Score = 98.7 bits (108), Expect = 3e-18 Identities = 91/112 (81%), Gaps = 5/112 (4%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG--ATTGCTTA 452 ||||| | | ||||||||| ||||||| || | ||||||||||||| | | ||| | Sbjct 371277 CAAATGAGCCATAACTGATGTAATGAGTTATCCACAGTTTCACTGTACTGGCAGTGC--A 371220 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| ||| ||||||||||||||||| |||||| || |||||||||| Sbjct 371219 TACTTAGATATGTATGGCTTAATCTTTGAGGTAAGCATGTG-CTACTGGCAG 371169 >seq12083 Length=958976 Score = 95.1 bits (104), Expect = 4e-17 Identities = 88/110 (80%), Gaps = 5/110 (5%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| || | |||||||||||||||||| || ||||||||| |||| | | ||| Sbjct 36121 CAAAGAAGCCATAACTGATTTAATGAGCTGTTTGCAGTTTCATTGTACTGGCCACACATA 36062 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 36061 CTTT----TGCATGGCTTAATCTTTGAGACAAGCATATG-TTACTGGCAG 36017 >seq8390 Length=295798 Score = 91.5 bits (100), Expect = 4e-16 Identities = 88/113 (78%), Gaps = 15/113 (13%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCA---CTGTATAGATTGCTT 451 |||| ||| ||| || |||||||||||||| | |||| || ||| | Sbjct 186239 CAAAGGAACCATAGCTCATTTAATGAGCCATCCACAGTACCAGCCCTG-----------T 186287 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 186288 GTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 186339 >seq9728 Length=1251873 Score = 89.7 bits (98), Expect = 2e-15 Identities = 82/101 (81%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCT-TATACTTAGACAT 463 |||||||||| ||||||| ||| || |||||||| || | | | | ||| || |||| Sbjct 781195 ATAACTGATTCAATGAGCTATTAGCCGTTTCACTATACTGGCAGTTGTGTACCTACACAT 781254 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | |||||||||| |||||||||||||||| |||||||||| Sbjct 781255 ACCTGGCTTAATCCTTGAGACAAGCATATG-CTACTGGCAG 781294 >seq9161 Length=1339885 Score = 87.8 bits (96), Expect = 5e-15 Identities = 75/91 (82%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT--TGCTTATACTTAGACA 462 ||| ||||| |||| | ||| |||||||||||||| | ||| ||||||||||| Sbjct 155337 ATAGCTGATCCGATGATCTATTTGCAGTTTCACTGTACTGGCCATGC--ATACTTAGACA 155394 Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATG 493 |||||||||||||||||||||||||||| || Sbjct 155395 TGCATGGCTTAATCTTTGAGACAAGCATTTG 155425 >seq9227 Length=1336110 Score = 84.2 bits (92), Expect = 7e-14 Identities = 82/101 (81%), Gaps = 5/101 (5%) Strand=Plus/Minus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTTATACTTAGACA 462 |||| ||||||||||||| || ||||| ||||||| || | ||| || | ||| | Sbjct 1203789 ATAAATGATTTAATGAGCTATCTACAGTTACACTGTACCAGCTGTGCACATCC--AGATA 1203732 Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||||| ||||||||||||||||||||||||| |||||||| Sbjct 1203731 TGCATAGCTTAATCTTTGAGACAAGCATATG-TTACTGGCA 1203692 >seq9303 Length=334686 Score = 82.4 bits (90), Expect = 2e-13 Identities = 79/100 (79%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||||||||||| |||||| ||| |||||||| ||| | | |||||||||||| Sbjct 142490 ATAACTGATTTCATGAGCTCTTCACAGTTTCAGGGTACTGGCCATGTGTACTTAGACATG 142431 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| ||||||||| ||||||||| ||||| |||||| || Sbjct 142430 CATAGCTTAATCTCTGAGACAAGTATATG-TTACTGGTAG 142392 >seq7966 Length=369449 Score = 80.6 bits (88), Expect = 8e-13 Identities = 80/100 (80%), Gaps = 9/100 (9%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT--TGCTTATACTTAGACA 462 |||||||| ||||||||| || ||||||||| |||| | ||| | ||||| Sbjct 78470 ATAACTGACTTAATGAGCTATCTGCAGTTTCATTGTACTGGCCATGC--ACACTTA---- 78523 Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGC 502 ||||||||||||||||||||||||||||||| | |||||| Sbjct 78524 TGCATGGCTTAATCTTTGAGACAAGCATATGTC-ACTGGC 78562 >seq10506 Length=1143887 Score = 78.8 bits (86), Expect = 3e-12 Identities = 77/98 (79%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466 ||||||||| |||||| ||| |||||||| ||| | | |||||||||||||| Sbjct 316 AACTGATTTCATGAGCTCTTCACAGTTTCAGGGTACTGGCCATGTGTACTTAGACATGCA 375 Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||||| ||||||||| ||||| |||||| || Sbjct 376 TAGCTTAATCTCTGAGACAAGTATATG-TTACTGGTAG 412 >seq9107 Length=202706 Score = 78.8 bits (86), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 9/106 (8%) Strand=Plus/Minus Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT--TGCTTATACTTA 458 ||| || ||||||||||||||| || |||||||| |||| | ||| | ||||| Sbjct 108888 AACCATGACTGATTTAATGAGCTATCTTCAGTTTCATTGTACTGGCCATGC--ACACTTA 108831 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||| |||||||||||| | ||||||||| Sbjct 108830 ----TGCATGGCTTAATCTTTCAGACAAGCATAT-ATTACTGGCAG 108790 >seq8861 Length=2329992 Score = 78.8 bits (86), Expect = 3e-12 Identities = 103/142 (73%), Gaps = 8/142 (6%) Strand=Plus/Minus Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149 |||||||||||||||| |||||| |||| || ||||||||| |||| || || ||||| Sbjct 1402399 CCTGCTGCCTTCCTTGAATGTGGGAGCCATTAATCAGGCTCCTGCTCCTGACTCAAACCC 1402340 Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATA 209 | ||||||| | || | ||| ||||| |||||||| ||||||||| Sbjct 1402339 TGATTCCCCATCAC----TCATA----AGTAGGAATGAGAACTACCATCAAAAGTTGATT 1402288 Query 210 GGGCAGAAATTTGAATGAACCA 231 |||| | | |||| |||| || Sbjct 1402287 AGGCAAACACTTGAGTGAATCA 1402266 >seq16915 Length=2286903 Score = 77.0 bits (84), Expect = 1e-11 Identities = 82/106 (77%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATT-GTCACTACCT 60 |||||||||||||||| | | ||| | ||||| | ||||| || |||||| ||| Sbjct 1765119 ACTCATTCCAATTACAGGGCATTGAAAAATTCCTGTCTTGTTATTTTTTTGTCACTGCCT 1765178 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGG 106 ||| ||| ||| ||||||||||| || ||||||||| ||||||| Sbjct 1765179 TCCCAGGTCAGGAGTGGGTAATTTGTGCACCTGCTGCCATCCTTGG 1765224 >seq15471 Length=2396380 Score = 77.0 bits (84), Expect = 1e-11 Identities = 49/52 (94%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||| |||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 2028127 TACTTAAACATGCATGGCTTAATCTTTGAGAGAAGCATAT-ACTACTGGCAG 2028077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510142839296