Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq5291 116 3e-21 seq11817 98.7 8e-16 >seq5291 Length=463539 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| ||||||| || ||||| ||||| ||||| ||||| || Sbjct 29698 GGTATACTCCACTATTTCTGTGCACAAGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTG 29757 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||||| |||||| || || || ||||| || Sbjct 29758 GTTGCTCTTCCGATTACAGGAATCTTTGTACAGCATGTATGGGGTACCTGTCTCTGTCTG 29817 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 29818 AGACTCAATGATGGCATACCAAAG 29841 >seq11817 Length=981421 Score = 98.7 bits (108), Expect = 8e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 |||||||| || || ||||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 480914 CAGGAGGTACAGGTTCCGGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 480855 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 480854 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 480808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397485502900640