Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq5291 116 3e-21
seq11817 98.7 8e-16
>seq5291
Length=463539
Score = 116 bits (128), Expect = 3e-21
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||||||||| || ||||| ||||||| || ||||| ||||| ||||| ||||| ||
Sbjct 29698 GGTATACTCCACTATTTCTGTGCACAAGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTG 29757
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| ||||| ||||| || | ||| ||||||| |||||| || || || ||||| ||
Sbjct 29758 GTTGCTCTTCCGATTACAGGAATCTTTGTACAGCATGTATGGGGTACCTGTCTCTGTCTG 29817
Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192
|||||||||||||| | ||||||
Sbjct 29818 AGACTCAATGATGGCATACCAAAG 29841
>seq11817
Length=981421
Score = 98.7 bits (108), Expect = 8e-16
Identities = 86/107 (80%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
|||||||| || || ||||||| || |||||||| ||||| || ||| ||| ||||||
Sbjct 480914 CAGGAGGTACAGGTTCCGGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 480855
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376
|| ||||| |||||||||||| | || || || || |||||||| ||
Sbjct 480854 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 480808
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397485502900640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |