Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq17872 143 4e-32 seq59684 138 2e-30 seq3067 134 2e-29 seq3089 113 7e-23 seq785344 78.8 1e-12 seq22258 78.8 1e-12 >seq17872 Length=21729 Score = 143 bits (158), Expect = 4e-32 Identities = 178/238 (75%), Gaps = 12/238 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||| | ||||| ||||| | | |||||| |||||| | Sbjct 12954 GTACAAAGGGCAGGGACTTAATCAACACAAGCTT-ATGACCCACACTTACTGGGAATT-C 13011 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116 |||||| | | || ||||||||| | ||||||||||| |||| ||||| | Sbjct 13012 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCAC----AAATGGGGTTCAACG 13067 Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 |||||| |||| | || ||| | || || ||| |||||||||||| || Sbjct 13068 GGTTACCCACGCCTGCCAGCATAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCACG 13127 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||| || | | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 13128 TGCAGCTCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 13184 >seq59684 Length=3972 Score = 138 bits (152), Expect = 2e-30 Identities = 182/248 (73%), Gaps = 21/248 (8%) Strand=Plus/Minus Query 4 CAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTC 63 |||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||| |||||| Sbjct 1162 CAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAA-TTCCTC 1105 Query 64 GTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATTACC 122 ||| | | || ||||||||| | |||||||||||| ||| || | | ||||| Sbjct 1104 GTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACC 1045 Query 123 CGGACCT-----------GTCGGC-CAAGGTGATAGACTCGTTGAA-----TACATCAGT 165 || |||| || ||| || | ||| | || || | | ||||| Sbjct 1044 CGCACCTGCAGGTGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCANGTCAGT 985 Query 166 GTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 ||||||||||||| |||| | |||||||||||||||||||||||||||||| ||||| || Sbjct 984 GTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 926 Query 226 TCCGTGGC 233 ||||| Sbjct 925 CGGGTGGC 918 >seq3067 Length=344781 Score = 134 bits (148), Expect = 2e-29 Identities = 176/238 (74%), Gaps = 12/238 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || || | | ||||| ||||| ||| |||||| |||||| | Sbjct 291507 GTACAAAGGGCAGGGACTTAATCGAGGGAAGCTT-ATGACCCGCCCTTACTGGGAATT-C 291564 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116 |||||| | | || || |||||| | ||||||||||| |||| |||| | Sbjct 291565 CTCGTTCATGGGGAATAACTGCAATCCCCGATCCCCATCAC----AAATGGGGTTCAGCG 291620 Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 ||||||| ||||| ||| ||| | || || ||| |||||| |||||| | Sbjct 291621 GGTTACCCGCACCTGCCGGTGTAGGGAAGGCACACGCTGAGCCAGTCAGTGCAGCGCGTG 291680 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 || |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 291681 GGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 291737 >seq3089 Length=192539 Score = 113 bits (124), Expect = 7e-23 Identities = 170/235 (72%), Gaps = 5/235 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||| | ||||| ||| | || |||||| |||||| | Sbjct 19461 GTACAAAGGGCAGGGACTTAATCAACACAAGCTT-ATGGCCCGTACTTACTGGGAATT-C 19518 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 ||| || | | || ||||||||| | |||||||| | || ||||| || || Sbjct 19519 CTCATTCATGGAGAATAATTGCAATCCCCGATCCCCATTATGAATGGGGTTCAACAGGTT 19578 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | |||| | ||| | || ||||| |||||||||| || ||| Sbjct 19579 ACCTGTGCCTGCAGATGTAGGGTAGGCACATGTTGAGCCAGTCAGTGTAGCATGCATGCA 19638 Query 180 GCCCAGAACAT-CTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||| |||||||||||||||||||||||| | ||||| ||| ||||| Sbjct 19639 GCCCTGGACATTCTAAGGGCATCACAGACCTGTTATCG-CTCAATCTTGAGTGGC 19692 >seq785344 Length=689 Score = 78.8 bits (86), Expect = 1e-12 Identities = 62/73 (85%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||| | |||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 117 TCAGTGTAGCACATGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 175 Query 221 AAACTTCCGTGGC 233 || || ||||| Sbjct 176 AATCTCAGGTGGC 188 >seq22258 Length=224561 Score = 78.8 bits (86), Expect = 1e-12 Identities = 62/73 (85%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||| | |||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 39922 TCAGTGTAGCACATGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 39864 Query 221 AAACTTCCGTGGC 233 || || ||||| Sbjct 39863 AATCTCAGGTGGC 39851 Score = 78.8 bits (86), Expect = 1e-12 Identities = 62/73 (85%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||| | |||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 43348 TCAGTGTAGCACATGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 43290 Query 221 AAACTTCCGTGGC 233 || || ||||| Sbjct 43289 AATCTCAGGTGGC 43277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745901150985