Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08]
837,179 sequences; 2,878,133,036 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq17872 143 4e-32
seq59684 138 2e-30
seq3067 134 2e-29
seq3089 113 7e-23
seq785344 78.8 1e-12
seq22258 78.8 1e-12
>seq17872
Length=21729
Score = 143 bits (158), Expect = 4e-32
Identities = 178/238 (75%), Gaps = 12/238 (5%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||| | ||||| ||||| | | |||||| |||||| |
Sbjct 12954 GTACAAAGGGCAGGGACTTAATCAACACAAGCTT-ATGACCCACACTTACTGGGAATT-C 13011
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116
|||||| | | || ||||||||| | ||||||||||| |||| ||||| |
Sbjct 13012 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCAC----AAATGGGGTTCAACG 13067
Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175
|||||| |||| | || ||| | || || ||| |||||||||||| ||
Sbjct 13068 GGTTACCCACGCCTGCCAGCATAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCACG 13127
Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
||| || | | |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 13128 TGCAGCTCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 13184
>seq59684
Length=3972
Score = 138 bits (152), Expect = 2e-30
Identities = 182/248 (73%), Gaps = 21/248 (8%)
Strand=Plus/Minus
Query 4 CAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTC 63
|||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||| ||||||
Sbjct 1162 CAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAA-TTCCTC 1105
Query 64 GTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATTACC 122
||| | | || ||||||||| | |||||||||||| ||| || | | |||||
Sbjct 1104 GTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACC 1045
Query 123 CGGACCT-----------GTCGGC-CAAGGTGATAGACTCGTTGAA-----TACATCAGT 165
|| |||| || ||| || | ||| | || || | | |||||
Sbjct 1044 CGCACCTGCAGGTGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCANGTCAGT 985
Query 166 GTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225
||||||||||||| |||| | |||||||||||||||||||||||||||||| ||||| ||
Sbjct 984 GTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 926
Query 226 TCCGTGGC 233
|||||
Sbjct 925 CGGGTGGC 918
>seq3067
Length=344781
Score = 134 bits (148), Expect = 2e-29
Identities = 176/238 (74%), Gaps = 12/238 (5%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || || | | ||||| ||||| ||| |||||| |||||| |
Sbjct 291507 GTACAAAGGGCAGGGACTTAATCGAGGGAAGCTT-ATGACCCGCCCTTACTGGGAATT-C 291564
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116
|||||| | | || || |||||| | ||||||||||| |||| |||| |
Sbjct 291565 CTCGTTCATGGGGAATAACTGCAATCCCCGATCCCCATCAC----AAATGGGGTTCAGCG 291620
Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175
||||||| ||||| ||| ||| | || || ||| |||||| |||||| |
Sbjct 291621 GGTTACCCGCACCTGCCGGTGTAGGGAAGGCACACGCTGAGCCAGTCAGTGCAGCGCGTG 291680
Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|| |||| | |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 291681 GGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 291737
>seq3089
Length=192539
Score = 113 bits (124), Expect = 7e-23
Identities = 170/235 (72%), Gaps = 5/235 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||| | ||||| ||| | || |||||| |||||| |
Sbjct 19461 GTACAAAGGGCAGGGACTTAATCAACACAAGCTT-ATGGCCCGTACTTACTGGGAATT-C 19518
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119
||| || | | || ||||||||| | |||||||| | || ||||| || ||
Sbjct 19519 CTCATTCATGGAGAATAATTGCAATCCCCGATCCCCATTATGAATGGGGTTCAACAGGTT 19578
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||| | |||| | ||| | || ||||| |||||||||| || |||
Sbjct 19579 ACCTGTGCCTGCAGATGTAGGGTAGGCACATGTTGAGCCAGTCAGTGTAGCATGCATGCA 19638
Query 180 GCCCAGAACAT-CTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| | |||| |||||||||||||||||||||||| | ||||| ||| |||||
Sbjct 19639 GCCCTGGACATTCTAAGGGCATCACAGACCTGTTATCG-CTCAATCTTGAGTGGC 19692
>seq785344
Length=689
Score = 78.8 bits (86), Expect = 1e-12
Identities = 62/73 (85%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220
|||||||||| | |||| |||| | |||||||||||||||||||||||||||||| |||
Sbjct 117 TCAGTGTAGCACATGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 175
Query 221 AAACTTCCGTGGC 233
|| || |||||
Sbjct 176 AATCTCAGGTGGC 188
>seq22258
Length=224561
Score = 78.8 bits (86), Expect = 1e-12
Identities = 62/73 (85%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220
|||||||||| | |||| |||| | |||||||||||||||||||||||||||||| |||
Sbjct 39922 TCAGTGTAGCACATGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 39864
Query 221 AAACTTCCGTGGC 233
|| || |||||
Sbjct 39863 AATCTCAGGTGGC 39851
Score = 78.8 bits (86), Expect = 1e-12
Identities = 62/73 (85%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220
|||||||||| | |||| |||| | |||||||||||||||||||||||||||||| |||
Sbjct 43348 TCAGTGTAGCACATGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 43290
Query 221 AAACTTCCGTGGC 233
|| || |||||
Sbjct 43289 AATCTCAGGTGGC 43277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 745901150985
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |