Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq59684 95.1 7e-18 seq616597 89.7 3e-16 seq17872 89.7 3e-16 >seq59684 Length=3972 Score = 95.1 bits (104), Expect = 7e-18 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 614 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCTGGCGGGTCATGGGAATAACGCCGCCG 555 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || | |||| |||| ||||| |||| ||||||||||||||||||| ||||||| Sbjct 554 CATGGCCAGTCAGCATCGTTTATGGTTGGAACTACGACGGTATCTGATCATCTTCGA 498 >seq616597 Length=332 Score = 89.7 bits (98), Expect = 3e-16 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| | || Sbjct 250 GAACCCAAAGACTTTGGTTTCCCGAAAGCTGCCCGGCGGGTCATGGGAATAACGCCACCG 191 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | ||||||||| |||| ||| ||||||||||||||||||| ||||||| Sbjct 190 CATCGCCAGTCGGCATCATTTATGGTCGGAACTACGACGGTATCTGATCATCTTCGA 134 >seq17872 Length=21729 Score = 89.7 bits (98), Expect = 3e-16 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| | ||| |||| ||| |||| ||||| |||| Sbjct 13538 GAACCCAAAGACTTTGGTTTCCCAGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 13597 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | ||| ||||| ||||| ||| ||||||||||||||| ||||||||||| Sbjct 13598 CATCGCCAGTTGGCATCGTTTATGGTCGGAACTACGACGGTATCTCATCGTCTTCGA 13654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276214962810