Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq17872 168 1e-39 seq59684 77.0 6e-12 seq616597 73.4 7e-11 seq303782 73.4 7e-11 >seq17872 Length=21729 Score = 168 bits (186), Expect = 1e-39 Identities = 207/278 (74%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT-TTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | || |||||||||||||||||||||||| Sbjct 13937 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCTGAACCGTTTACTTTGAAAAAATTAGAGTGT 13878 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 13877 TCAAAGCAGGCCCGAGCCGCCTGGATACCACAGCTAGGAATAATGGAATAGGACC-GCGG 13819 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 |||| |||||||||||| | || | | |||||||| |||||| | |||||| | Sbjct 13818 TTCTCTTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGATGGCCGGGGGCATTC 13759 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 13758 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 13699 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||| ||||| Sbjct 13698 TTTGCCAAGAATGTTTTCATTAATCA-AGAACAAAAGT 13662 >seq59684 Length=3972 Score = 77.0 bits (84), Expect = 6e-12 Identities = 61/72 (85%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 262 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 321 Query 98 TCAAAGCAGGCC 109 |||||||||||| Sbjct 322 TCAAAGCAGGCC 333 Score = 73.4 bits (80), Expect = 7e-11 Identities = 93/127 (73%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||| |||||| | | |||| | ||||| | |||||||||||||||||| Sbjct 365 ATGATTAAGAGGGATGGCCAGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 424 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 | ||||| || | | ||||| || ||||| |||||||||||||||| ||| Sbjct 425 CCGGTGCAAGACGGACCAGAGTGAAAGAATTTGCCAAGAATGTTTTCATTAATCA-AGAA 483 Query 306 CGAAAGT 312 ||||||| Sbjct 484 CGAAAGT 490 >seq616597 Length=332 Score = 73.4 bits (80), Expect = 7e-11 Identities = 93/127 (73%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||| ||||| | |||||| | ||||| | |||||||||||||||||| Sbjct 1 ATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 60 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 ||||| || | | |||||| || ||||| |||||||||||||||| ||| Sbjct 61 CCGGCGCAAGACGGACCAGAGTGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAA 119 Query 306 CGAAAGT 312 ||||||| Sbjct 120 CGAAAGT 126 >seq303782 Length=235 Score = 73.4 bits (80), Expect = 7e-11 Identities = 60/72 (83%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| || || ||| | | | |||||||||||||||||||||||| Sbjct 133 ATGCTCTTAGCTGAGTGTCCCACGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 192 Query 98 TCAAAGCAGGCC 109 |||||||||||| Sbjct 193 TCAAAGCAGGCC 204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 907538137792