Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq158694 150 7e-34 seq74166 149 3e-33 seq33763 149 3e-33 seq17872 145 3e-32 seq49320 140 1e-30 seq728659 132 2e-28 seq11240 111 6e-22 seq3088 111 6e-22 seq32712 102 3e-19 seq9252 82.4 3e-13 seq2462 78.8 4e-12 seq11451 75.2 5e-11 seq1196 75.2 5e-11 >seq158694 Length=208 Score = 150 bits (166), Expect = 7e-34 Identities = 113/133 (85%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | |||| |||||||||||||||||||||||||||| ||||||||| Sbjct 72 GAGCATGAGCACACGTGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGTGAAG 131 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||||| ||| ||||||||||| ||||| | Sbjct 132 CCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCTGACC 191 Query 669 TGGGTATAGGGGC 681 || |||||||||| Sbjct 192 TGCGTATAGGGGC 204 >seq74166 Length=18784 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 17216 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 17275 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 17276 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 17335 >seq33763 Length=5759 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 4382 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 4323 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 4322 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 4263 Score = 120 bits (132), Expect = 1e-24 Identities = 123/160 (77%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 5492 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 5433 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 5432 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTG--A 5375 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 5374 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 5335 >seq17872 Length=21729 Score = 145 bits (160), Expect = 3e-32 Identities = 104/120 (87%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||| |||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 8539 TGTTAGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 8480 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 8479 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 8420 Score = 116 bits (128), Expect = 2e-23 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 9602 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 9543 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 9542 ACCGGCACGAGACCGATAGTCAACAAGTACTGTAAGGGAAAGTTGAAAAGAACTTTGAAG 9483 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || ||||||| ||| | ||| || Sbjct 9482 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAA 9446 >seq49320 Length=25279 Score = 140 bits (154), Expect = 1e-30 Identities = 103/120 (86%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 13250 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 13191 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| | ||| || ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 13190 GTGGAGGTCTGTAGCTGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 13131 >seq728659 Length=461 Score = 132 bits (146), Expect = 2e-28 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| | |||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 166 TGTTAGAACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 107 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||||||| || |||||| ||| | ||||||||| ||||| | || |||||||||| Sbjct 106 GTGGAGGTCCGTAGCGGTCCTGACTTGCAAATCGGTCGTCTGACCTGCGTATAGGGGC 49 >seq11240 Length=217766 Score = 111 bits (122), Expect = 6e-22 Identities = 98/121 (81%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||| || |||||||||||||||||| || ||| ||||||||||||||||| Sbjct 6021 TGTTAGGACCCAAATGATGGTGAACTATGCCTGGATGGGGCGAAGCCAGAGGAAACTCCA 6080 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATA-GGGGCG 682 ||||||| | |||||| ||| ||||||||| || || | |||||||| |||||| Sbjct 6081 GTGGAGGTCCATAGCGGTCCTGATGTGCAAATCAGTCATCTGACCTGGGTATATGGGGCG 6140 Query 683 A 683 | Sbjct 6141 A 6141 >seq3088 Length=622919 Score = 111 bits (122), Expect = 6e-22 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| | |||| |||| ||||||||||| |||| ||||| |||| |||||||||| Sbjct 507831 GAGCACACGTGTTAGGACTGGAAAGATGGTGGACTAGGCCTGGGCAGGGCGAAGCCAGAG 507890 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||||||||||||| || ||||| ||| | |||||||| | ||| || | |||| Sbjct 507891 CAAACTCTGGTGGAGGTCCGTGGCGGTCCTGACATGCAAATCAGTTGTCCAACCTAGGTA 507950 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 507951 TAGGGGCGA 507959 >seq32712 Length=149392 Score = 102 bits (112), Expect = 3e-19 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 588 CTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGC 647 ||||||||| |||| |||||||||||||||||||||||||| || ||| || ||| | Sbjct 12162 CTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCAGTCCTGAC 12103 Query 648 GTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||| ||||| | |||||||| |||||| Sbjct 12102 GTGCAAATCGGTCGTCTGACCTGGGTATAAGGGCGA 12067 Score = 78.8 bits (86), Expect = 4e-12 Identities = 61/73 (84%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 611 AGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTG 670 |||||||||||||||||||| || ||| || ||| ||||||||||| ||||| | || Sbjct 11948 AGAGGAAACTCTGGTGGAGGTCCGTAGCAGTCCTGACGTGCAAATCGGTCGTCTGACCTG 11889 Query 671 GGTATAGGGGCGA 683 |||||| |||||| Sbjct 11888 GGTATAAGGGCGA 11876 >seq9252 Length=177268 Score = 82.4 bits (90), Expect = 3e-13 Identities = 85/110 (77%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | ||| || |||||| | | ||||| ||||||| Sbjct 151799 GAGTCCGGTTGCTTGGGAATGCAGCCCAAAACTGGTGGTAAACTCCATCTAAGGCTAAAT 151740 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAG 149 | |||| ||||||| |||| ||||||| | | ||||| ||||||| Sbjct 151739 ACTGGCAAGAGACCAATAGTCAACAAGTACCAT-AGGGAAAGTTGAAAAG 151691 Score = 82.4 bits (90), Expect = 3e-13 Identities = 85/110 (77%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | ||| || |||||| | | ||||| ||||||| Sbjct 153299 GAGTCCGGTTGCTTGGGAATGCAGCCCAAAACTGGTGGTAAACTCCATCTAAGGCTAAAT 153240 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAG 149 | |||| ||||||| |||| ||||||| | | ||||| ||||||| Sbjct 153239 ACTGGCAAGAGACCAATAGTCAACAAGTACCAT-AGGGAAAGTTGAAAAG 153191 >seq2462 Length=201339 Score = 78.8 bits (86), Expect = 4e-12 Identities = 89/119 (75%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATG---CCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 || ||||| ||||||||||||||||| |||| |||| ||||||||||||||||| Sbjct 140285 TTAGGACCTGAAAGATGGTGAACTATTATTCCTGGGCAGGGCAAAGCCAGAGGAAACTCT 140344 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 | || ||| |||| || ||| | || ||||| | |||| | ||| ||| ||||| Sbjct 140345 GCTGAAGGTCTTCAGCAGTCCTGACATGTAAATCAGTTGTCAGACCTGGCTATGGGGGC 140403 >seq11451 Length=646102 Score = 75.2 bits (82), Expect = 5e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||| | |||| |||||||||||||||| ||| ||||||||||||||||||| ||||| Sbjct 153937 GACTCAAAAGTTGGTGAACTATGCCTGGGCAGGAAGAAGCCAGAGGAAACTCTGATGGAG 153996 Query 630 GCTCGCAGCGGTTCTG 645 | || ||| || ||| Sbjct 153997 GTTCATAGCAGTCCTG 154012 >seq1196 Length=80530 Score = 75.2 bits (82), Expect = 5e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||||||| |||| |||||||||||| | || |||| |||||||||||||| ||||||| Sbjct 47171 TGGGACCTGAAATATGGTGAACTATCCTTGGGCAGGGAGAAGCCAGAGGAAATTCTGGTG 47112 Query 627 GAGG 630 |||| Sbjct 47111 GAGG 47108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2062042510450