Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq33763 100 5e-19 seq465192 95.1 2e-17 seq277741 95.1 2e-17 seq17872 93.3 7e-17 seq104154 91.5 2e-16 seq638821 86.0 1e-14 seq18328 86.0 1e-14 seq22774 80.6 4e-13 seq521534 78.8 2e-12 seq233834 78.8 2e-12 seq1989 73.4 6e-11 >seq33763 Length=5759 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 1116 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 1059 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||| ||||||||| Sbjct 1058 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAATTCAGAATCC 1005 >seq465192 Length=271 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | |||||| | ||||| | || | || |||| || || Sbjct 69 GTACGAGAGGAACTGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAA 126 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 127 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 180 >seq277741 Length=230 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 || ||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 151 GTCCGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 94 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||| ||||||| |||||||| |||||||||||||||||||||||| Sbjct 93 GGGGCGAAGCTCCCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 40 >seq17872 Length=21729 Score = 93.3 bits (102), Expect = 7e-17 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 ||||||||||||||| | |||||| | ||||| | || | || |||| || || || Sbjct 5569 TACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATG 5512 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 5511 TTCTGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 5459 >seq104154 Length=1244 Score = 91.5 bits (100), Expect = 2e-16 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | | |||||| | ||||| | || | || |||| || || | Sbjct 753 GTACGAGAGGAACCACAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 696 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 | |||||||||||||||| |||||||| ||||| |||||||||||||||| Sbjct 695 GTGGCGAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAAT 644 >seq638821 Length=348 Score = 86.0 bits (94), Expect = 1e-14 Identities = 73/89 (82%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | || | || |||| || || || ||||||||||||||||| |||||||| Sbjct 282 TTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGCGGGATTATGA 223 Query 91 CTGAACGCCTCTAAGTCAGAATCCATGCC 119 ||||| |||||||||||||||||| |||| Sbjct 222 CTGAAGGCCTCTAAGTCAGAATCC-TGCC 195 >seq18328 Length=97728 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||||||| | ||||| | ||||| | || | || |||| || || | Sbjct 7835 GTACAAGAGGAACCGCAGG-TTCAGGC-ATTTGGTGTATGTGCTTGGCTGAGAAGCCAAT 7778 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| || || |||||||||||||||||| Sbjct 7777 GGGGCGAAGCTACCATCTGTGGGATTATGACTAAATGCCTCTAAGTCAGAATCC 7724 >seq22774 Length=187556 Score = 80.6 bits (88), Expect = 4e-13 Identities = 75/94 (80%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 21 TTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGC 80 |||||| | ||||| | || | || |||| || | || |||||||||||||||| Sbjct 68424 TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCTAATGGGGCGAAGCTACCATCTGT 68482 Query 81 TGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||| |||||||||||||||||||||||| Sbjct 68483 GGGATTATGACTGAACGCCTCTAAGTCAGAATCC 68516 >seq521534 Length=287 Score = 78.8 bits (86), Expect = 2e-12 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 282 GCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 232 >seq233834 Length=221 Score = 78.8 bits (86), Expect = 2e-12 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 209 GCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 159 >seq1989 Length=59621 Score = 73.4 bits (80), Expect = 6e-11 Identities = 60/72 (83%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 48 CTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107 |||| || || || || ||||||||||||| |||||||| |||||| |||||||||| Sbjct 1670 CTGAGGAGCCAATGGAGCAAAGCTACCATCTGTGGGATTATGACTGAACACCTCTAAGTC 1611 Query 108 AGAATCCATGCC 119 ||||||| |||| Sbjct 1610 AGAATCC-TGCC 1600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 812556147456