Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq87 206 4e-51 seq46 95.1 2e-17 seq12 95.1 2e-17 seq166 89.7 8e-16 >seq87 Length=9762952 Score = 206 bits (228), Expect = 4e-51 Identities = 199/250 (80%), Gaps = 9/250 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||| ||||||||||| | Sbjct 7155112 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGCCCTGTTATTGC-T 7155054 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA--CCAACC---- 128 ||| || | | ||| ||| | ||| |||||| ||| | | |||||| Sbjct 7155053 CAATCT-CGGGTAACTGATCACCACTTGTCACTCTAAAAAGTTGGGGATGCCAACCGCTC 7154995 Query 129 ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 | || || ||| |||||| | | |||||||||||||||||||||||||||||| Sbjct 7154994 AGTGTTCATTAA-CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACA 7154936 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 7154935 AATCGCTCCACCAGATAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTA 7154876 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 7154875 TCAATCTGTC 7154866 >seq46 Length=11947515 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/116 (78%), Gaps = 7/116 (6%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| ||| ||| ||||||||||||||||| ||||| | Sbjct 857693 CTAGTTAGCATGCCAGAGTCTCATTCAGTATAGGAATTAACCAGACAAACATTTCCACTA 857634 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 | |||||| ||||| |||||||| |||||||||||||||||||||| |||| Sbjct 857633 ATTAAGAA------TGCAC-ACCACCCACAGAATCAAGAAAGAGCTATCAACCTGT 857585 >seq12 Length=26428533 Score = 95.1 bits (104), Expect = 2e-17 Identities = 157/222 (71%), Gaps = 20/222 (9%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||| || ||||| ||| | |||||||||| |||||||||||||||||| || Sbjct 17681362 GTCAGTGTAACGTGCGTGTAGCCATGGACATCTAAGGTAATCACAGACCTGTTATTG-CT 17681304 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAACCATA 131 ||| | || |||||| | ||| | ||||||||||||| | | | |||| || Sbjct 17681303 CAATC-TCGGGTGGCTGAAGGCCGCTTGTCCCTCTAAGAAGTTGGAGGACGCCAA--ATG 17681247 Query 132 GTCGATGGGGCTAT-------TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 || | || ||| |||||| | || |||| || ||||| ||||||||| | Sbjct 17681246 CTC--CGCGGTTATGTAACAGTTAGCATGCTAGAGTCTTATTTGTTATTGGAATTAACTA 17681189 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCAC 226 |||| || |||| ||||||| | || |||| |||||| Sbjct 17681188 GACAGATTGCTCC----ACTAAGATCAGCTGTGCAACACCAC 17681151 >seq166 Length=5848183 Score = 89.7 bits (98), Expect = 8e-16 Identities = 83/103 (81%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 ||| ||||||| | ||||||||||| ||||| ||||||||||||||||| |||||||| Sbjct 1219346 CCGCCAGTGTATCTTGCGTGCGGCCCCGAACAGCTAAGGGCATCACAGACGTGTTATTG- 1219288 Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| | | || |||||| | ||| | |||| ||||||||| Sbjct 1219287 CTCCATC-TCGGGTGGCTGAATGCCGCTCGTCCTTCTAAGAAG 1219246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796787124708