Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq166 123 5e-26 seq87 123 5e-26 seq12 77.0 6e-12 >seq166 Length=5848183 Score = 123 bits (136), Expect = 5e-26 Identities = 185/259 (71%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 68 CCGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTC 126 ||| ||||||||| |||| | |||| | |||| || | | ||| |||||||| ||| Sbjct 1219242 CCGCCTTCTTAGAAGGACGAGCGGCATTCAGCCACCCGA-GATGGAG-CAATAACACGTC 1219299 Query 127 TGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC 186 |||||||||||||| ||||| ||||||||||| | ||||||| | | || || || | Sbjct 1219300 TGTGATGCCCTTAGCTGTTCGGGGCCGCACGCAAGATACACTGGCGGGCTCAGCGTGTGC 1219359 Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 | | | ||| | ||| ||||| | || | | ||||| |||||| | | Sbjct 1219360 CTACCATACGCCAGCAGGCTCCGGTAACCCATGGAACCCCATTCGTGATGGGGACCGGGG 1219419 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 |||||||||| || | | ||| |||||| || ||| || || ||||| || ||| | Sbjct 1219420 ATTGCAATTACCGCCCATGAACAAGGAATTCCCAGTGAGTGCAGGTCATAAGTTTGCGGT 1219479 Query 307 GATTACGTCCCTGCCCTTT 325 ||||| ||||||||||||| Sbjct 1219480 GATTAAGTCCCTGCCCTTT 1219498 >seq87 Length=9762952 Score = 123 bits (136), Expect = 5e-26 Identities = 162/223 (73%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||| ||||||||||||||||||| | |||| ||||||||||||| Sbjct 7155048 AGATTGAG-CAATAACAGGGCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTAC 7155106 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 |||||| | || || || | | ||| || || ||| ||||| | | || | Sbjct 7155107 ACTGACTGGCTCAGCGTGTGCCTACCCTACGCTGGCAGGCGCAGGTAAACCACTGAATCC 7155166 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | | ||| ||||||| | ||||| |||||| | | | ||||||| || |||||| Sbjct 7155167 CATTTGTGATGGGGATGGGAGATTGCCATTATTCTCCATGAGTGAGGAATTCCCAGTAAG 7155226 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | |||| ||| || |||| |||||||||||||||| Sbjct 7155227 TGTGGGTCAGAAGCTTGC----ATTAAGTCCCTGCCCTTTGTA 7155265 >seq12 Length=26428533 Score = 77.0 bits (84), Expect = 6e-12 Identities = 80/101 (79%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | |||| | |||| || | ||||| |||||||||||||||| Sbjct 17681264 CTTCTTAGAGGGACAAGCGGCCTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 17681321 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 || |||||||||| | ||| ||||| || ||||||||| Sbjct 17681322 ATTACCTTAGATGTCCATGGCTACACGCACGTTACACTGAC 17681362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947184200704