Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq6 165 1e-38 seq3 107 3e-21 seq4 93.3 6e-17 seq17 80.6 4e-13 seq5 80.6 4e-13 >seq6 Length=116888256 Score = 165 bits (182), Expect = 1e-38 Identities = 180/234 (77%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| ||||||||||||| || |||| || ||||| ||||| ||| |||||| |||||| | Sbjct 19457073 GTAAAAAGGGCAGGGACTTAATCAATGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 19457130 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 19457131 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 19457190 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 19457191 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 19457250 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 19457251 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 19457303 >seq3 Length=223996068 Score = 107 bits (118), Expect = 3e-21 Identities = 161/223 (72%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| ||||| ||||| || |||||| |||||| | Sbjct 10814717 GTACAAAGGGCAGGGACTTA----ACGCAAGCTT-ATGACCCGTACTTACTGGGAATT-C 10814664 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || || |||||| ||| ||||||| | ||||| | || Sbjct 10814663 CTCGTTCATGGGGAATAACTGCAATCCCTGATCACCATCACTAATGGGGTTCAATGGGTT 10814604 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| |||| | || || | || | ||| ||||||||| ||| |||| Sbjct 10814603 ACCCACGCCTGCCAGCACCGGGTAGGCACATGCTGAGCCAGTCAGTGTAGTGCGTGTGCA 10814544 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 10814543 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 10814502 >seq4 Length=119216639 Score = 93.3 bits (102), Expect = 6e-17 Identities = 156/219 (71%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||| | ||||| ||| | | |||||| |||||| | Sbjct 107743800 GTACAAAGGGCAGGGACTTAATCAACACAAGCTT-ATGGCCCTTACTTACTGGGAATT-C 107743743 Query 61 CTCGTTGA-AGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGAT 118 ||| || ||| || ||||||||| |||||||| | || ||||| || | Sbjct 107743742 CTCATTCCTAGAGAAA-AATTGCAATCCCAGATCCCCATTATGAATGGGGTTCAACAGGT 107743684 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| | |||| ||| || | || | |||| |||||| ||| || ||| Sbjct 107743683 CACCTGTGCCTGCAGGCGTGGGGTAGGCACACATTGAGCCAGTCAGTGGAGCATGCCTGC 107743624 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||| ||||||||||||||||||| Sbjct 107743623 AGCCCTGGACATCTAAGGGTATCACAGACCTGTTATTGC 107743585 >seq17 Length=72251135 Score = 80.6 bits (88), Expect = 4e-13 Identities = 119/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 37 TGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCC 96 |||| | | |||||| |||||| ||||||| | | || ||||||||| | |||||| Sbjct 24952824 TGACCCACACTTACTGGGAATT-CCTCGTTCATGGGGAATAATTGCAATCCTTGATCCCC 24952766 Query 97 ATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGA 155 ||||||| ||||| | ||||||| |||| ||| ||| | || || ||| Sbjct 24952765 ATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCTGGCGTAGGGTAGGCACACGGTGA 24952706 Query 156 ATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATC 201 |||||||||| ||| ||| |||| | ||||||||||||||| Sbjct 24952705 GCCAGTCAGTGTAGCACGCATGCAGCCCCGGACATCTAAGGGCATC 24952660 Score = 80.6 bits (88), Expect = 4e-13 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||| ||| Sbjct 70565231 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCCCTTACTGGGAA-TTC 70565288 Query 61 CTCGTTGAAGACCAACAATTGCA 83 |||||| | | || ||||||| Sbjct 70565289 CTCGTTCATGGGGAATAATTGCA 70565311 >seq5 Length=107836144 Score = 80.6 bits (88), Expect = 4e-13 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTT 212 |||||||||||||||||| |||| | |||||||||||||||||||||||||| Sbjct 48730801 TCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTT 48730750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751960180190