Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1 114 2e-23 seq24 96.9 6e-18 seq7 96.9 6e-18 seq17 93.3 8e-17 >seq1 Length=275406953 Score = 114 bits (126), Expect = 2e-23 Identities = 125/163 (77%), Gaps = 5/163 (3%) Strand=Plus/Minus Query 41 GCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTTC 99 || ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||||| Sbjct 141667760 GCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTC 141667701 Query 100 AAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 |||||||||| || | |||| ||| |||||||| ||||||||| |||||| Sbjct 141667700 AAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGAC-CGCGGTT 141667642 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA 199 ||||||||||||||| | || | | |||||||| ||||| Sbjct 141667641 CTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGA 141667599 >seq24 Length=41976827 Score = 96.9 bits (106), Expect = 6e-18 Identities = 107/138 (78%), Gaps = 6/138 (4%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTA-GAGTG 96 |||| ||| ||| |||| ||| || ||| | | | |||||||||||| ||||| ||||| Sbjct 9696801 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAACAATTAAGAGTG 9696742 Query 97 TTCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCG 153 |||||| |||||| || | |||| ||| |||||||| ||||||||| ||| Sbjct 9696741 TTCAAAACAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCG 9696683 Query 154 GTTCTATTTTGTTGGTTT 171 |||||||||||||||||| Sbjct 9696682 GTTCTATTTTGTTGGTTT 9696665 >seq7 Length=100009711 Score = 96.9 bits (106), Expect = 6e-18 Identities = 107/138 (78%), Gaps = 6/138 (4%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTA-GAGTG 96 |||| ||| ||| |||| ||| || ||| | | | |||||||||||| ||||| ||||| Sbjct 14465167 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAACAATTAAGAGTG 14465226 Query 97 TTCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCG 153 |||||| |||||| || | |||| ||| |||||||| ||||||||| ||| Sbjct 14465227 TTCAAAACAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCG 14465285 Query 154 GTTCTATTTTGTTGGTTT 171 |||||||||||||||||| Sbjct 14465286 GTTCTATTTTGTTGGTTT 14465303 >seq17 Length=72251135 Score = 93.3 bits (102), Expect = 8e-17 Identities = 126/173 (73%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA 199 ||||||||| | |||||| |||||||||||| | | || | | |||||||| ||||| Sbjct 24952018 GAATAGGACC-GTGGTTCTGTTTTGTTGGTTTTTGGAACTGAGGCCATGATTAAGAGGGA 24952076 Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTA 259 | | | |||| | |||| | |||||||||||||||||| | ||||| Sbjct 24952077 TGGCCAGGGGCATTCATATTGCACCACTAGAGGTGAAATTCTTGGACCAGTGCAAGACGG 24952136 Query 260 ACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || | | |||||| || ||||| |||||||||||||||| ||| |||||| Sbjct 24952137 ACCAAAGTGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAATGAAAGT 24952188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915149975168