Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq22 149 3e-33 seq4 149 3e-33 seq17 118 4e-24 seq25 114 5e-23 seq27 95.1 5e-17 seq3 95.1 5e-17 seq11 93.3 2e-16 seq16 86.0 3e-14 seq19 82.4 3e-13 seq20 78.8 4e-12 seq2 75.2 5e-11 >seq22 Length=50780147 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 2594872 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 2594931 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 2594932 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 2594991 >seq4 Length=119216639 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 117525853 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 117525794 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 117525793 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 117525734 Score = 86.0 bits (94), Expect = 3e-14 Identities = 93/122 (76%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 47 GTTGTTTGGG-AATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGC 105 |||| ||||| |||||||| | || ||| |||||| | | ||||| |||||||| ||| Sbjct 117526909 GTTGCTTGGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATACCGGC 117526850 Query 106 CAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAG 165 ||||||||||| ||||||| || | ||||| ||||||| |||||| | || || Sbjct 117526849 ACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAGAGGAAG 117526790 Query 166 TT 167 || Sbjct 117526789 TT 117526788 >seq17 Length=72251135 Score = 118 bits (130), Expect = 4e-24 Identities = 94/113 (83%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 575 GAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCG 634 |||||||||||||||||||||| |||| |||||||||||||||||||||||||| || Sbjct 38955902 GAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCG 38955961 Query 635 CAGCGGTTCTGGCGTGCAAATCGATCGTC----AAATTTGGGTATAGGGGCGA 683 |||||| ||| ||||||||||| || || | ||||||||||||||| Sbjct 38955962 TAGCGGTCCTGACGTGCAAATCGGTCATCCGGTCGACCTGGGTATAGGGGCGA 38956014 >seq25 Length=45223504 Score = 114 bits (126), Expect = 5e-23 Identities = 106/135 (79%), Gaps = 6/135 (4%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| |||| ||||| |||||||||||||||||| ||| |||| ||||||| || Sbjct 29415021 GAGCATACATGTTAGGACCGGAAAGATGGTGAACTATGTCTGGGCAGGGCGAAGCCACAG 29415080 Query 615 GAAACTCTGGTGGAGGCTC------GCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||| | | |||||| ||| |||||||||| ||||| | Sbjct 29415081 GAAACTCTGGTGGAGGTCCGTAGCGGTAGCGGTCCTGATGTGCAAATCGGTCGTCTGACC 29415140 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||| Sbjct 29415141 CAGGTATAGGGGCGA 29415155 >seq27 Length=135185801 Score = 95.1 bits (104), Expect = 5e-17 Identities = 100/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 3845088 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 3845147 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| | | |||| | ||||| ||||| || Sbjct 3845148 ACCGGCACGAGACCGATAGTCAACAAGTACCGCAAAGAAAAGTTAAAAAGAACTTT--AA 3845205 Query 160 AGAGAGTTAAA 170 |||||||| || Sbjct 3845206 AGAGAGTTCAA 3845216 >seq3 Length=223996068 Score = 95.1 bits (104), Expect = 5e-17 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || |||| |||||| | | ||||| ||||||| Sbjct 42691793 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 42691734 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 | ||||| |||||||||| ||||||| || | ||||| |||| Sbjct 42691733 ACTGGCCCGAGACCGATAATCAACAAGTACCGTAAGGGAAAGTTGAA 42691687 >seq11 Length=62170480 Score = 93.3 bits (102), Expect = 2e-16 Identities = 94/121 (78%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| || ||| ||||||||||||||||||||| | ||| ||||||||||||| ||| Sbjct 28608366 TGTTAGGGCCCAAAAGATGGTGAACTATGCCTGGACGGGGCGAAGCCAGAGGAAGCTCCA 28608307 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATA-GGGGCG 682 | || || | || ||| ||| | ||||||| | ||||| | |||||||| |||||| Sbjct 28608306 GCGGCGGTCCATAGTGGTCCTGACATGCAAATTGGTCGTCCGACCTGGGTATATGGGGCG 28608247 Query 683 A 683 | Sbjct 28608246 A 28608246 >seq16 Length=71693149 Score = 86.0 bits (94), Expect = 3e-14 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| ||||| |||||||||||||||||||||| |||| |||||||||||||| |||| Sbjct 7987625 GTTAGGACCGGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAA--CTGG 7987568 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 || ||| | ||||| ||| |||||| || ||||| Sbjct 7987567 TGAAGGTCCATTGCGGTCCTGACGTGCAGGTCAGTCGTC 7987529 >seq19 Length=60445663 Score = 82.4 bits (90), Expect = 3e-13 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || |||| |||||| | | ||||| ||||||| Sbjct 12674184 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 12674125 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 | || ||| ||||| | ||||||| || | ||||| ||||||| || Sbjct 12674124 AACAGCATGAGGCCGATTGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAAC 12674072 >seq20 Length=51049468 Score = 78.8 bits (86), Expect = 4e-12 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || ||||| ||||||| ||||||| |||||| ||| |||||||||||||||||| | Sbjct 31461012 TTAGGACCTGAAAGATAGTGAACTCTGCCTGGGCAGGAAGAAGCCAGAGGAAACTCTACT 31461071 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||||| ||||| | ||| |||| || || || || | ||| || |||||| Sbjct 31461072 GGAGGTCCGCAGTCATCCTGACGTGTAAGTCAGTCATCTGACCTGGCTACAGGGGC 31461127 >seq2 Length=248966461 Score = 75.2 bits (82), Expect = 5e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||| | |||| ||||||| |||||||| ||| |||||||||||||||||||| ||||| Sbjct 219742164 GACTCAAAAGTTGGTGAATTATGCCTGGGCAGGATGAAGCCAGAGGAAACTCTGATGGAG 219742105 Query 630 GCTCGCAGCGGTTCTG 645 | || ||| || ||| Sbjct 219742104 GTTCATAGCAGTCCTG 219742089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079882754300