Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq6 208 1e-51 seq3 167 4e-39 seq17 147 3e-33 seq2 129 9e-28 seq5 118 2e-24 seq1 111 3e-22 seq7 102 1e-19 seq21 95.1 2e-17 seq15 89.7 8e-16 seq12 78.8 1e-12 >seq6 Length=116888256 Score = 208 bits (230), Expect = 1e-51 Identities = 183/223 (82%), Gaps = 9/223 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 19457231 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 19457289 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 19457290 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 19457348 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 19457349 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 19457408 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230 ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 19457409 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 19457451 Score = 116 bits (128), Expect = 6e-24 Identities = 182/252 (72%), Gaps = 19/252 (8%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA--CCTGTTATTGC-C 73 ||||| || || ||| |||| ||||| |||||||||||||| ||||||| || | Sbjct 69743479 CAGTGCAGTGCTTATGCAGCCCCAGACATCCAAGGGCATCACAGATGCCTGTTA--GCAC 69743536 Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAAC--C 128 ||| || | ||||| | |||| |||| |||||||||| | ||||||| | Sbjct 69743537 TCAGTCTCAGAC-GGCTGAATGCCACGTGTCCTTCTAAGAAGCTGGGGGACACCAACTGC 69743595 Query 129 ATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 || | || |||| |||||| | | ||||| ||| ||||| |||||||||| | Sbjct 69743596 TCAGGGGGTGCCTAGCTAGTTAGCATGCCAGAGTCTCTTTCATTATCAGAATTAACCAAA 69743655 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 ||||| |||||||| ||| |||||||||||||| |||| |||| ||||||||| Sbjct 69743656 CAAATTGCTCCACCAG----GAATAGCCATGCACCACCATCCATGGAATGGAGAAAGAGC 69743711 Query 247 TATCAATCTGTC 258 |||||||||| Sbjct 69743712 --TCAATCTGTC 69743721 >seq3 Length=223996068 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 100574698 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 100574757 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 100574758 ACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTC 100574814 Score = 149 bits (164), Expect = 1e-33 Identities = 93/100 (93%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 7447062 GTCTCCTTCGTTATCGGAATTAACCAGACAAATCACTTTACCAACTAAGAATGGCCATGC 7447121 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||| |||||||||||||| |||||| Sbjct 7447122 ACCACCACCCACAGAATCGAGAAAGAGCTATCAGTCTGTC 7447161 Score = 100 bits (110), Expect = 5e-19 Identities = 82/97 (85%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| ||| |||| |||| | |||||||||||||||||||||||||||||| || Sbjct 10814563 GTCAGTGTAGTGCGTGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 10814505 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAA 111 | || ||| |||||| | |||| | |||||||||| Sbjct 10814504 C-AATTTCGGGTGGCTGAACGCCACTTGTCCCTCTAA 10814469 >seq17 Length=72251135 Score = 147 bits (162), Expect = 3e-33 Identities = 202/281 (72%), Gaps = 30/281 (11%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 || ||||| | ||||||||||| ||| ||| |||| | ||||||||||||||| ||| Sbjct 24952714 ACACGGTGAGCCAGTCAGTGTAGCACGCATGCAGCCCCGGACATCTAAGGGCATCTTAGA 24952655 Query 62 C-------------CTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTC 108 |||||||||| |||| | | | ||||| | |||| | ||||||| Sbjct 24952654 TTGCTCAAGGGCATCTGTTATTGC-TCAATCGTGGGT-GGCTGAACGCCACTTGTCCCTC 24952597 Query 109 TAAGAAGCCAGCCA---CCAACCATAGTCGATGGGG--------CTATTTAGCAGGTTAA 157 ||||||| | || |||| | | |||| ||| |||||| | | Sbjct 24952596 TAAGAAGTTGGGGGATGCCGACCAC--TTG--GGGGTCACATAACTAGTTAGCATGCCAG 24952541 Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 217 ||||| ||||||||||||||||||| ||||| ||||||||||||| || ||||||| Sbjct 24952540 AATCTCGACTGTTATCGGAATTAACCAGAAAAATCGCTCCACCAACTAATAATGGCCATG 24952481 Query 218 CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||| |||| ||||||||||||||||||||| Sbjct 24952480 CACCACCACCCACAGAACTGAGAAAGAGCTATCAATCTGTC 24952440 >seq2 Length=248966461 Score = 129 bits (142), Expect = 9e-28 Identities = 100/118 (85%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||| | | ||||| || |||||| ||||||||||||||| || ||||||| Sbjct 171442535 GCTAGTTAGCATGCCAGAGTCTCATTTGTTATCAGAATTAACCAGACAATTC-CTCCACC 171442477 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||| || |||| |||||||| |||||||||||| Sbjct 171442476 TTCTAAGAACGGCCATGCACCACCACCTATGGAATTGAGAAAGAGTTATCAATCTGTC 171442419 >seq5 Length=107836144 Score = 118 bits (130), Expect = 2e-24 Identities = 181/254 (71%), Gaps = 28/254 (11%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||| |||||| | |||| |||| | ||||||||||||||||||| ||||| ||| || Sbjct 64237072 GTCACTGTAGCACATGTGCAGCCCCGGGCATCTAAGGGCATCACAGAACTGTTGTTG-CT 64237130 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG---------CCAGCCACCA 125 ||| ||| |||||| | |||| | |||||||||||||| | | || | Sbjct 64237131 CAACCTT-GGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCTGACAGC- 64237188 Query 126 ACCATAGTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 | ||| | || | ||| |||||| | | ||||| || |||||| ||||||||| Sbjct 64237189 TCGGGAGTTGCAT--GACTAGTTAGCATGCCAGAGTCTCATTTGTTATCAGAATTAACCT 64237246 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 || |||||||||| | ||||||||||||||||||| ||||| || | Sbjct 64237247 GATAAATCACTCC-----------ATGGCCATGCACCACCACCCACGGAATCGAGGA--G 64237293 Query 245 GCTATCAATCTGTC 258 |||||||||||||| Sbjct 64237294 GCTATCAATCTGTC 64237307 Score = 82.4 bits (90), Expect = 1e-13 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTT 67 ||||||||||||||||||| |||| | |||||||||||||||||||||||||| Sbjct 48730802 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTT 48730750 >seq1 Length=275406953 Score = 111 bits (122), Expect = 3e-22 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 |||||||||||||||||| |||||| ||||||||| ||||| | ||||||||||| ||| Sbjct 71736380 GGAATTAACCAGACAAATTGCTCCACTAACTAAGAATGGCCAAGTACCACCACCCACAGA 71736439 Query 234 ATCAAGAAAGAGCTATCAATCTGT 257 | |||||||||||| ||||||||| Sbjct 71736440 ACCAAGAAAGAGCTGTCAATCTGT 71736463 >seq7 Length=100009711 Score = 102 bits (112), Expect = 1e-19 Identities = 80/95 (84%), Gaps = 8/95 (8%) Strand=Plus/Minus Query 164 GTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223 |||| ||||||||| |||||||||||||||||||||| ||||| | ||||||||||| Sbjct 14012134 GTTCATTATCGGAAATAACCAGACAAATCACTCCACC----AAGAATGTCCATGCACCAC 14012079 Query 224 CACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| |||| ||||||||||||||||||||| Sbjct 14012078 CAC----GGAATTGAGAAAGAGCTATCAATCTGTC 14012048 >seq21 Length=49987992 Score = 95.1 bits (104), Expect = 2e-17 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| || | || |||||||| || ||||| | |||||||| | |||| ||||||| Sbjct 13564321 GTCTCATTTGACATAGGAATTAAGCAAACAAACCTTTCCACCAATTCAGAATGGCCATGT 13564262 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||| ||| |||||||||||| || ||||| |||||| Sbjct 13564261 ACCACCAGCCACAGAATCAAGAAAAAGATATCAGTCTGTC 13564222 >seq15 Length=80783214 Score = 89.7 bits (98), Expect = 8e-16 Identities = 75/93 (81%), Gaps = 8/93 (9%) Strand=Plus/Plus Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 || |||| ||||||||||||| ||||| ||||| || ||||||||||||||| Sbjct 27547188 TCCTTATTGGAATTAACCAGAAAAATCGCTCCATGAA--------GGCCATGCACCACCA 27547239 Query 226 CCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| |||||| ||||||||||||||||| ||| Sbjct 27547240 TCCACAGAATCCAGAAAGAGCTATCAATCAGTC 27547272 >seq12 Length=79028859 Score = 78.8 bits (86), Expect = 1e-12 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||| ||||||||||||||||||| |||||||||||||||||| || | || ||| || Sbjct 7292365 AAAGCACTCCACCAACTAAGAACACCCATGCACCACCACCCATGGACTGAAAAAACCACT 7292424 Query 248 ATCAATCTGTC 258 |||||||||| Sbjct 7292425 GTCAATCTGTC 7292435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796757807946