Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq17 95.1 7e-18 seq6 77.0 2e-12 seq3 77.0 2e-12 >seq17 Length=72251135 Score = 95.1 bits (104), Expect = 7e-18 Identities = 69/76 (91%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||||||||||||||||||||||| Sbjct 70565191 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGGGTGTACAAAGGGCAGGGACT 70565248 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 70565249 TAAT-CAACGCAAGCT 70565263 >seq6 Length=116888256 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| ||| ||||||| ||||||||||| ||||| ||||||||||||| Sbjct 19457033 CTCACTAAACCATCCAATT-GGTAGTA-GCGACGGGCGGTGTGTAAAAAGGGCAGGGACT 19457090 Query 109 TAATACAACGCAAGCT 124 |||| ||| ||||||| Sbjct 19457091 TAAT-CAATGCAAGCT 19457105 >seq3 Length=223996068 Score = 77.0 bits (84), Expect = 2e-12 Identities = 64/76 (84%), Gaps = 7/76 (9%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 || ||||| ||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 10814757 CTTACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 10814700 Query 109 TAATACAACGCAAGCT 124 | |||||||||| Sbjct 10814699 T-----AACGCAAGCT 10814689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300784585880