Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq6 188 1e-45 seq3 131 3e-28 seq4 107 4e-21 seq17 100 5e-19 seq5 82.4 1e-13 >seq6 Length=116888256 Score = 188 bits (208), Expect = 1e-45 Identities = 199/258 (77%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 19457329 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 19457272 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 19457271 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 19457212 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 19457211 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 19457152 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| || |||||| Sbjct 19457151 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCATTGATT 19457092 Query 311 ACGTCCCTGCCCTTTGTA 328 | ||||||||||||| || Sbjct 19457091 AAGTCCCTGCCCTTTTTA 19457074 >seq3 Length=223996068 Score = 131 bits (144), Expect = 3e-28 Identities = 162/220 (74%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||| |||||||||||||||||||||||||||||| | |||| |||| ||| ||||||| Sbjct 10814502 TTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACACGCACTACACT 10814560 Query 169 GACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG 228 ||| | || | || | | || || || ||| ||||||| | | || | | Sbjct 10814561 GACTGGCTCAGCATGTGCCTACCCGGTGCTGGCAGGCGTGGGTAACCCATTGAACCCCAT 10814620 Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 | ||| ||| ||| | |||||| ||||| | | | |||||||||| || |||||| | Sbjct 10814621 TAGTGATGGTGATCAGGGATTGCAGTTATTCCCCATGAACGAGGAATTCCCAGTAAGTAC 10814680 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| ||| ||| |||||||||||||||| Sbjct 10814681 GGGTCATAAGCTTGCG----TTAAGTCCCTGCCCTTTGTA 10814716 >seq4 Length=119216639 Score = 107 bits (118), Expect = 4e-21 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||| ||||||||||| | |||| ||| || ||| ||||||| | Sbjct 107743585 GCAATAACAGGTCTGTGATACCCTTAGATGTCCAGGGCTGCAGGCATGCTCCACTGACTG 107743644 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 ||| | || | | || ||| | ||| ||| | || | || | | || | Sbjct 107743645 GCTCAATGTGTGCCTACCCCACGCCTGCAGGCACAGGTGACCTGTTGAACCCCATTCATA 107743704 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCT-TCAACGAGGAATGCCTAGTAAGCGCGTGT 292 ||||||| | ||||||||| || |||| || ||||||| || |||||| | | Sbjct 107743705 ATGGGGATCTGGGATTGCAATT-TTTCTCTAGGAATGAGGAATTCCCAGTAAGTAAGGGC 107743763 Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||| | |||||||| |||||||||||||||| Sbjct 107743764 CATAAGCTTGTGTTGATTAAGTCCCTGCCCTTTGTA 107743799 >seq17 Length=72251135 Score = 100 bits (110), Expect = 5e-19 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||| | |||| ||| ||| ||||||||||| | || || || | | Sbjct 24952660 GATGCCCTTAGATGTCCGGGGCTGCATGCGTGCTACACTGACTGGCTCACCGTGTGCCTA 24952719 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| ||| | ||| |||||| | | || | | ||||| ||||||| || ||| Sbjct 24952720 CCCTACGCCAGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCAAGGATT 24952779 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294 ||||||||| | | | |||||||||| || |||||| | | |||| Sbjct 24952780 GCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGTGGGTCA 24952824 Score = 91.5 bits (100), Expect = 3e-16 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 |||||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||| Sbjct 70565311 TGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGGGCGGGTCATAAGCTTGCGTTGA 70565252 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||| |||||||||||||||| Sbjct 70565251 TTAAGTCCCTGCCCTTTGTA 70565232 >seq5 Length=107836144 Score = 82.4 bits (90), Expect = 1e-13 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 119 AACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 |||||||||||||||||||||||||| | |||| ||||||||||||||||||| Sbjct 48730750 AACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGAC 48730802 Score = 80.6 bits (88), Expect = 5e-13 Identities = 125/172 (73%), Gaps = 5/172 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | ||| ||||| ||| ||||| |||||| Sbjct 64237170 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACCCAAGGTTGAG-CAACAACAGTTCTGTG 64237113 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||||||| | |||| |||| | |||||| |||| | || | || | | Sbjct 64237112 ATGCCCTTAGATGCCCGGGGCTGCACATGTGCTACAGTGACTGGCTCAGCATGTGCCTAC 64237053 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCT-GTCGTGCTGGGGAT 241 ||| ||| | ||| ||||||| || ||| ||| || | ||| ||||||| Sbjct 64237052 CCTATGCCAGCAGGCGTGGGTAA-CTAGTTGAACCCTCTTTGTGATGGGGAT 64237002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947148226048