Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1 347 4e-93 seq4 316 7e-84 seq2 237 5e-60 seq7 168 2e-39 seq19 165 3e-38 seq15 131 5e-28 seq3 120 1e-24 seq27 111 5e-22 seq25 100 9e-19 seq13 91.5 5e-16 seq9 91.5 5e-16 >seq1 Length=275406953 Score = 347 bits (384), Expect = 4e-93 Identities = 257/298 (86%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||| ||||||||||||||| ||| ||||| | |||||||||||| |||| Sbjct 26493557 CTCCCACTAATTCTACACCTCTCATGTCTCTTCACCTTCCCACACTAGAGTCAAGTTCAA 26493498 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | | Sbjct 26493497 TAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCATTCCCTTGGCTGTGGTTTCGATGG 26493438 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||| ||||||||||||||| | |||||||| || | ||||||||| ||||| Sbjct 26493437 ATAGTAGGTAGAGACAGTGGGAATCTC--TCATCCATTCGTGTGAGTCACTAATCAGATG 26493380 Query 417 ACGAGGCA-TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 || ||||| |||||||| |||||||||||||| |||||||| ||| ||| | | |||| Sbjct 26493379 ACAAGGCATTTTGGCTATCTTAAGAGAGTCATGGTTACTCCTGCCACTTAGCGGTGCTTC 26493320 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | ||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 26493319 ATGGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCATCAACA 26493262 Score = 77.0 bits (84), Expect = 1e-11 Identities = 82/107 (77%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||| | |||| ||||||| ||| |||| |||||||||||||| |||| Sbjct 240384802 CTTCTGCTTCATGGGAGGTTTCTGTCGTCCCTGAGCTTGCCTTAGGACACCTGTGTTACC 240384743 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| | | || |||||| ||||||||||||||| || |||| Sbjct 240384742 -TTTGACAGGTATACCACCCCAGTCAAACTCCCCACCTGGCACTGTC 240384697 Score = 75.2 bits (82), Expect = 4e-11 Identities = 68/82 (83%), Gaps = 3/82 (4%) Strand=Plus/Plus Query 25 TTTCTGTTCTCCATGAGTCCCCCTTAGGACACCT-GCGTTATGGTTTAACAGATGTGCCG 83 |||||| |||| |||| | | |||||||||||| |||||| |||| |||| ||| ||| Sbjct 72451546 TTTCTGGCCTCCCTGAGACTCTCTTAGGACACCTGGCGTTACCGTTTGACAG-TGTACCG 72451604 Query 84 CCCCAGCCAAACTCCCCACCTG 105 ||||| ||||||||||||||| Sbjct 72451605 -CCCAGTCAAACTCCCCACCTG 72451625 >seq4 Length=119216639 Score = 316 bits (350), Expect = 7e-84 Identities = 251/300 (84%), Gaps = 1/300 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||| ||||||||||||| || ||||| | | |||||||||||||||||| Sbjct 84357559 CTCCCACTTACTCTACACCTCTCATATCTCTTCACTGTGCCAGACTAGAGTCAAGCTCAA 84357618 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 || |||||||||||| | |||||| |||||||| |||||||||||||||||||| || | Sbjct 84357619 CAATGTCTTCTTTCCCAGATGATTCTGCCAAGCCTGTTCCCTTGGCTGTGGTTTC-CTGG 84357677 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||| ||||||||| ||| |||||||||| || ||| |||||| ||| Sbjct 84357678 ATAGTAGGTAGGGACAATGGGAATCTGGTTCATCCATTCATCTGCATCAGTAATTACATG 84357737 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | || || ||||||| |||||||||||||| ||||||||| || ||||| || ||| Sbjct 84357738 ATGAAGCTTTTGGCTCTCTTAAGAGAGTCATCGTTACTCCCACCAGTTACCTGCCCTTCA 84357797 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536 |||||||||| ||| |||||||||| |||||| ||||||||||||| ||||||| || Sbjct 84357798 CTGAATTTCTTTACTATGACATTCAGTGCACTGAGCAGAAATCACATCAGGTCAACACCA 84357857 Score = 95.1 bits (104), Expect = 4e-17 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||||||||||| | |||||||||| |||| |||||||| ||||| |||| Sbjct 18352716 CTTCTGCTCTACAGGAGGTCTCTGTTCTCCCTGAGCTTACCTTAGGATACCTGTGTTACC 18352775 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| || |||||| ||||||||| || || || |||| Sbjct 18352776 ATTTGACAGGTGTACCACCCCAGTCAAACTCCCAACATGGCACTGTC 18352822 >seq2 Length=248966461 Score = 237 bits (262), Expect = 5e-60 Identities = 176/206 (85%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||| ||||| ||| ||||| | | | ||||||||||||| |||| Sbjct 198911584 CTCCCACTTATTCTACACGTCTCAGGTCTCTTCACCATGCCAGACTAGAGTCAAGTTCAA 198911643 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||| |||||||| |||| || ||||||||||||||||||| ||||| Sbjct 198911644 TAGGGTCTTCTTTCCCTGCTGATTCTGCCACACCTGTTCCCTTGGCTGTGGTTTTGCTAG 198911703 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||| ||||| |||| || ||||||||||| |||||||| || || Sbjct 198911704 ATAGTAGGTAGGGACAATGGGAGTCTCCTTCATCCATTCATGGATGTCACTAACTATATA 198911763 Query 417 ACGAGGCATTTGGCTACCTTAAGAGA 442 | ||||||| | |||||||||||||| Sbjct 198911764 ATGAGGCATCTAGCTACCTTAAGAGA 198911789 Score = 87.8 bits (96), Expect = 6e-15 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 376 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCT 435 |||| ||| || ||||||||||| || |||||||| |||||| ||| ||||| ||||| Sbjct 97764330 GGAAGCTC-TTCATCCATTCATGTGCA-CACTAATTGGATGACCAGGAATTTGAGTACCT 97764273 Query 436 TAAGAGAGTCATAGTTACTCCCGCCGT 462 ||| ||||||||||||||||| || || Sbjct 97764272 TAAAAGAGTCATAGTTACTCCTGCTGT 97764246 >seq7 Length=100009711 Score = 168 bits (186), Expect = 2e-39 Identities = 125/146 (86%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||| ||||||||| || ||||| | | ||||||| || |||||| Sbjct 72765645 CTCCCACTTATTCTGCACCTCTCATTTCTCTTCACCATGCTAGACTAGAAGCAGGCTCAA 72765704 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||| |||| |||| |||||||| ||||||||| ||||||||||||||||||| || | Sbjct 72765705 CAGGGTTTTCTCTCCCTGCTGATTCAGCCAAGCCCATTCCCTTGGCTGTGGTTTCACTGG 72765764 Query 357 ATAGTAGATAGGGACAGTGGGAATCT 382 ||||||| |||||||||||||||||| Sbjct 72765765 ATAGTAGGTAGGGACAGTGGGAATCT 72765790 Score = 77.0 bits (84), Expect = 1e-11 Identities = 81/107 (76%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || | |||| ||||||| ||| |||| ||||||||||||||||||| Sbjct 74390735 CTTCTGTTCCATGGGAGGTTTCTGTCCTCTCTGAGCTTGCCTTAGGACACCTGCGTTACT 74390794 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| | ||| || || ||||||||||| || |||| Sbjct 74390795 GTTTGACAGGTGTACTGCCACATTCAGACTCCCCACCTCGCACTGTC 74390841 >seq19 Length=60445663 Score = 165 bits (182), Expect = 3e-38 Identities = 125/146 (86%), Gaps = 5/146 (3%) Strand=Plus/Minus Query 356 GATAGTAGATA--GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 || ||||| || |||||||||||||||||||| || ||||||||| ||||| ||||| | Sbjct 30167292 GACAGTAGGTAAAGGGACAGTGGGAATCTCGTTCATTCATTCATGCACGTCATTAATTGG 30167233 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 |||| |||||||||||||||| |||||||||||||||||||||| |||||||| | || Sbjct 30167232 ATGATGAGGCATTTGGCTACCGTAAGAGAGTCATAGTTACTCCCACCGTTTAC---CACT 30167176 Query 474 TGGTTGAATTTCTTCACTTTGACATT 499 ||||||||||||||| |||||| Sbjct 30167175 CCACTGAATTTCTTCACTTCGACATT 30167150 >seq15 Length=80783214 Score = 131 bits (144), Expect = 5e-28 Identities = 90/102 (88%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 ||| ||| ||||||| | |||||||||||||||||| | |||||| || | ||||||| Sbjct 5381507 TTTTGCTGGATAGTAAAAAGGGACAGTGGGAATCTCACTCATCCATACACACACGTCACT 5381566 Query 408 AATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG 449 |||||||||| ||||||||||||||||||||||||||||||| Sbjct 5381567 AATTAGATGATGAGGCATTTGGCTACCTTAAGAGAGTCATAG 5381608 >seq3 Length=223996068 Score = 120 bits (132), Expect = 1e-24 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465 |||||||||||| | ||||||||||||||| ||||| | |||||||| | | |||| Sbjct 44842430 CTAATTAGATGATAAAGCATTTGGCTACCTTGAGAGATTGTTAGTTACTTTCATCATTTA 44842371 Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525 || | ||| ||| ||||||||||||||||||||||| |||| ||||||||||| | || Sbjct 44842370 CCAGAACTTCATTGTATTTCTTCACTTTGACATTCAGAACACTAGGCAGAAATCATACTG 44842311 Query 526 C 526 | Sbjct 44842310 C 44842310 Score = 105 bits (116), Expect = 2e-20 Identities = 117/152 (77%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 372 AGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 431 |||| |||||| | | || |||||| | ||| || |||||||||||| || || |||| Sbjct 61783739 AGTGAGAATCTTGGTCATGAATTCATACATGTCTCTGATTAGATGACGAAGCGTT-GGCT 61783797 Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 ||||||||||| ||||||||||| ||| |||| ||| ||||||||||||||| Sbjct 61783798 ACCTTAAGAGATTCATAGTTACTGT-GCCATTTATTTAA-CTTCATTGAATTTCTTCACT 61783855 Query 492 TTGACATTCAGAGCACTGGGCAGAAATCACAT 523 ||||||| | | |||||||| ||| || || Sbjct 61783856 CTGACATTGAATGTACTGGGCAAAAACCATAT 61783887 >seq27 Length=135185801 Score = 111 bits (122), Expect = 5e-22 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 259 CAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGA 318 || ||| ||||| | |||||||||||||||||||||||||||||||||||| ||||| Sbjct 11139008 CATGTCTCTTCACCGTGCCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCTGCTGA 11138949 Query 319 TTCCGCCAAGCCCGTTCCCTTGGC 342 ||||||||| |||||||||||||| Sbjct 11138948 TTCCGCCAAACCCGTTCCCTTGGC 11138925 >seq25 Length=45223504 Score = 100 bits (110), Expect = 9e-19 Identities = 120/161 (75%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTG 344 ||||| | ||||||| ||| |||| || | || | ||||| || ||| |||||||| Sbjct 15216656 AGTCAGGTTCAACAGAGTCCTCTTCATCCACAGACTTTGCCAAACCA-TTCTCTTGGCTG 15216714 Query 345 TGGTTTCGCTAGATAGTAGAT--AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG 402 | ||||| ||| | ||| | | || ||| ||||| || || ||||||||||| | Sbjct 15216715 TAGTTTCATCAGAAAATAGGTGAACAGAGAGTAGGAATATCATTCTTCCATTCATGCATG 15216774 Query 403 TCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443 || ||||||||||| |||| |||| || |||||||||||| Sbjct 15216775 TCTCTAATTAGATGCTGAGGAATTTAGCCACCTTAAGAGAG 15216815 >seq13 Length=82951069 Score = 91.5 bits (100), Expect = 5e-16 Identities = 86/109 (79%), Gaps = 3/109 (3%) Strand=Plus/Plus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 || ||| | ||| ||| ||||||| |||| | || | ||| |||||||||| |||| | Sbjct 71555776 TTCTGCCCCACAAGAGGTTTCTGTCCTCCCTAAGCTCGCCTCAGGACACCTGTGTTACCG 71555835 Query 68 TTTAACAGATGT---GCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| |||||||||| ||||||||||||||| || |||| Sbjct 71555836 TTTGACAGGTGTACCGCCGCCCCAGTCAAACTCCCCACCTGGCATTGTC 71555884 >seq9 Length=94583238 Score = 91.5 bits (100), Expect = 5e-16 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | ||||| ||||||| |||| |||| | |||||||||||| | |||| Sbjct 76782549 CTTCTGCTCCATAGGAGGTTTCTGTCCTCCCTGAGCTCACCTTAGGACACCCGTGTTACA 76782608 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 101 |||| |||| ||| || |||||| ||||||||||| Sbjct 76782609 GTTTGACAGGTGTACCACCCCAGTCAAACTCCCCA 76782643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635110619968