Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq15 86.0 1e-14 seq5 78.8 2e-12 seq21 77.0 5e-12 seq27 75.2 2e-11 seq22 75.2 2e-11 seq10 75.2 2e-11 seq3 75.2 2e-11 seq1 75.2 2e-11 seq7 73.4 6e-11 >seq15 Length=80783214 Score = 86.0 bits (94), Expect = 1e-14 Identities = 76/94 (81%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 21 TTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGC 80 |||||| | ||||| | || | || |||| || || || |||||||||||||||| Sbjct 17475492 TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGT 17475550 Query 81 TGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||| |||||||||||||||||||||||| Sbjct 17475551 GGGATTATGACTGAACGCCTCTAAGTCAGAATCC 17475584 >seq5 Length=107836144 Score = 78.8 bits (86), Expect = 2e-12 Identities = 72/91 (79%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| |||| | || |||| || || || || ||||||| ||||| |||||||| Sbjct 8842576 TTGGTGTTTGTGCTTGGCTGAGGAGCCAATGGGGCAAAGCTACTATCTGTGGGATTATGA 8842635 Query 91 CTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 ||||| ||||||||||||||||||| |||| Sbjct 8842636 CTGAATGCCTCTAAGTCAGAATCCAGCCCAG 8842666 >seq21 Length=49987992 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||||| | | ||||| | ||||| | || | || |||| || || | Sbjct 8850246 GTACAAGAGGAACCACAGG-TTCAGGC-ATTTGGTGTATGTGCTTGGCTGAGAAGCCAAT 8850303 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||| | |||||||| || || |||||||||||||||||| Sbjct 8850304 GGGGCGAAGCTACCATCCGTGGGATTATGACTAAATGCCTCTAAGTCAGAATCC 8850357 >seq27 Length=135185801 Score = 75.2 bits (82), Expect = 2e-11 Identities = 86/113 (76%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | |||| | | ||| | | || | || ||| || || | Sbjct 24763754 GTATGAGAGGAACCGCAGG-TTCACAC-ATTTGATGTATGTGCTTGGTTGAGGAGTCAAT 24763811 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||||||| ||||||| |||||| |||||||||||||||| Sbjct 24763812 GGGGCGAAGCTACCATCTGTGAGATTATGACTGAACACCTCTAAGTCAGAATC 24763864 >seq22 Length=50780147 Score = 75.2 bits (82), Expect = 2e-11 Identities = 86/113 (76%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | |||| | | ||| | | || | || ||| || || | Sbjct 25147419 GTATGAGAGGAACCGCAGG-TTCACAC-ATTTGATGTATGTGCTTGGTTGAGGAGTCAAT 25147362 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||||||| ||||||| |||||| |||||||||||||||| Sbjct 25147361 GGGGCGAAGCTACCATCTGTGAGATTATGACTGAACACCTCTAAGTCAGAATC 25147309 >seq10 Length=86377204 Score = 75.2 bits (82), Expect = 2e-11 Identities = 86/113 (76%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | |||| | | ||| | | || | || ||| || || | Sbjct 49987725 GTATGAGAGGAACCGCAGG-TTCACAC-ATTTGATGTATGTGCTTGGTTGAGGAGTCAAT 49987782 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||||||| ||||||| |||||| |||||||||||||||| Sbjct 49987783 GGGGCGAAGCTACCATCTGTGAGATTATGACTGAACACCTCTAAGTCAGAATC 49987835 >seq3 Length=223996068 Score = 75.2 bits (82), Expect = 2e-11 Identities = 86/113 (76%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | |||| | | ||| | | || | || ||| || || | Sbjct 116573458 GTATGAGAGGAACCGCAGG-TTCACAC-ATTTGATGTATGTGCTTGGTTGAGGAGTCAAT 116573515 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||||||| ||||||| |||||| |||||||||||||||| Sbjct 116573516 GGGGCGAAGCTACCATCTGTGAGATTATGACTGAACACCTCTAAGTCAGAATC 116573568 >seq1 Length=275406953 Score = 75.2 bits (82), Expect = 2e-11 Identities = 86/113 (76%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | |||| | | ||| | | || | || ||| || || | Sbjct 83763114 GTATGAGAGGAACCGCAGG-TTCACAC-ATTTGATGTATGTGCTTGGTTGAGGAGTCAAT 83763057 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||||||| ||||||| |||||| |||||||||||||||| Sbjct 83763056 GGGGCGAAGCTACCATCTGTGAGATTATGACTGAACACCTCTAAGTCAGAATC 83763004 >seq7 Length=100009711 Score = 73.4 bits (80), Expect = 6e-11 Identities = 86/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||| |||| |||||| | | ||| | || | || |||| || | | Sbjct 72765034 GTAGGAGAGGAACTGCGGG-TTCAGAC-ATTCGGTGTATGTGCTTGGCTGAGGAGTAAAT 72764977 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | ||||||||||||| |||||||| ||||| ||||| |||||||||||| Sbjct 72764976 GGGTCAAAGCTACCATCTGTGGGATTATGACTGAATGCCTCCAAGTCAGAATCC 72764923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819156621824