Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq24 381 2e-103 seq3 205 3e-50 seq27 122 3e-25 seq2 114 4e-23 seq18 111 5e-22 seq8 105 2e-20 seq15 104 7e-20 seq25 95.1 4e-17 seq2881 93.3 1e-16 seq17 93.3 1e-16 seq20 91.5 4e-16 seq1 91.5 4e-16 seq13 78.8 3e-12 >seq24 Length=41976827 Score = 381 bits (422), Expect = 2e-103 Identities = 420/557 (75%), Gaps = 59/557 (11%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 9696998 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 9697057 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9697058 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 9697117 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 9697118 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 9697177 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 9697178 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 9697237 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGC------- 284 || | |||||| | | ||||| || ||||||| || || Sbjct 9697238 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCC 9697297 Query 285 ----------CCCGAAGG---------GCGTTGGTTTTTTATCTAATAAATACA------ 319 || | ||| | ||||| |||| |||| |||||| || Sbjct 9697298 CCGGCCGGGGCCGGGAGGAGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 9697356 Query 320 CCCCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGT 372 |||| ||||| ||||| | |||||||||||||||||||||||||| || Sbjct 9697357 CCCCCCGCGAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGT 9697414 Query 373 TATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427 |||||| |||| | || | | | |||| ||| ||||||||||||||||||||||| Sbjct 9697415 TATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTC 9697474 Query 428 GCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 |||||||||||||| | | ||||||||||||||||||||||||||||||||||| Sbjct 9697475 GCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAG 9697534 Query 488 CATATGACTACTGGCAG 504 |||||| |||||||||| Sbjct 9697535 CATATG-CTACTGGCAG 9697550 >seq3 Length=223996068 Score = 205 bits (226), Expect = 3e-50 Identities = 181/221 (82%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 8 TTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGT 66 ||||||| ||| | | | ||||| ||||||| ||||| | |||||||||||||| | Sbjct 66197310 TTCCAATGACAGGGTCTCGAAAGAATCCTGTATTGTTATTTTTCGTCACTACCTCCCCCT 66197251 Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 ||| ||| |||||||||||| | |||||||||||||||||||||| ||||| |||||||| Sbjct 66197250 GTCAGGAGTGGGTAATTTGCACACCTGCTGCCTTCCTTGGATGTGCTAGCCATTTCTCAG 66197191 Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG-CCA 185 ||||| |||| ||||||||||||| ||||||| | |||| | | |||| | |||| || Sbjct 66197190 GCTCCATCTCTGGAATCGAACCCTGATTCCCCATCACCCATGGTCACCAAGATAGGTACA 66197131 Query 186 CT-ATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAAT 225 | || |||||||| ||||||||| |||||| |||||||| Sbjct 66197130 GTGAT--TACCATCGCAAGTTGATAAGGCAGACATTTGAAT 66197092 Score = 107 bits (118), Expect = 6e-21 Identities = 94/113 (83%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCT-T 451 |||||| | | |||||||||||||||||| ||| |||||||||||| | | ||| | Sbjct 140120537 ATCAAAGGAGCCATAACTGATTTAATGAGCTATTTGCAGTTTCACTGCACA-ATTCATGC 140120595 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| ||| |||||||||| | ||||||||||||||| |||||||||| Sbjct 140120596 GTACTTAGATATGGATGGCTTAATATGTGAGACAAGCATATG-CTACTGGCAG 140120647 >seq27 Length=135185801 Score = 122 bits (134), Expect = 3e-25 Identities = 82/92 (89%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 92 TGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTA 151 || ||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||| Sbjct 48500343 TGTTGCCTTCCTTGGATGTGGTAGCCATTTCTCAGGCTCCCTCTCTGGAATTGAACCCTG 48500402 Query 152 ATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 ||||||| | |||||| | |||||||||||| Sbjct 48500403 ATTCCCCCTCACCCGTGGTCACCATGGTAGGC 48500434 Score = 96.9 bits (106), Expect = 1e-17 Identities = 89/113 (79%), Gaps = 15/113 (13%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCA---CTGTATAGATTGCTT 451 |||| ||| ||||||||||||||||||||| | |||| || ||| | Sbjct 121810070 CAAAGGAACCATAACTGATTTAATGAGCCATCCACAGTACCAGCCCTG-----------T 121810022 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 121810021 GTACTTAGACATGCATGGCTTAATCTTTGAGATAAGCATATG-CTACTGGCAG 121809970 >seq2 Length=248966461 Score = 114 bits (126), Expect = 4e-23 Identities = 121/153 (79%), Gaps = 10/153 (7%) Strand=Plus/Minus Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGT-ACT-ATCAAATAAACGATAACTGAT 413 ||||||||||||| |||||| | | || | || | | | |||| ||| ||||||||| Sbjct 174392289 TCTAGAATTACCA--GTTATCTAAGAAGAAGAGTGAGTGACCAAAGGAACCATAACTGAT 174392232 Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTAT--ACTTAGACATGCATGGCT 471 ||||||||| | | |||||||||||| | || ||| |||||||||||||| ||| Sbjct 174392231 TTAATGAGCAAGCCACAGTTTCACTGTTTCA---GCCTATGCACTTAGACATGCATAGCT 174392175 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||| || || ||||||| Sbjct 174392174 TAATCTTTGAGACAAGCATGTG-CTGCTGGCAG 174392143 Score = 78.8 bits (86), Expect = 3e-12 Identities = 86/111 (77%), Gaps = 9/111 (8%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTAT 453 |||| ||| |||||||||| |||||| | |||||||||||||| || || Sbjct 47202223 CAAAGGAACTGTAACTGATTTGATGAGCTAAATGCAGTTTCACTGTACCAG---GC---- 47202171 Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | | ||||||||||||||||||||||||||||| || | |||||||||| Sbjct 47202170 AGGCATACATGCATGGCTTAATCTTTGAGACAAGCGTA-GGCTACTGGCAG 47202121 >seq18 Length=68494538 Score = 111 bits (122), Expect = 5e-22 Identities = 64/66 (97%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49720101 TGGGTAATTTGTGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 49720042 Query 135 TCCGGA 140 ||| || Sbjct 49720041 TCCAGA 49720036 >seq8 Length=90615088 Score = 105 bits (116), Expect = 2e-20 Identities = 86/104 (83%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 34 CTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTG 93 |||||| | | ||||| ||||||||||| | ||| || | ||||||||| ||||| Sbjct 14550894 CTGTATTACTTTTTAT---CACTACCTCCCTGGGTCACGAGAGAGTAATTTGCCTGCCTG 14550950 Query 94 CTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC 137 |||||||||||| | ||||||||| ||||||||||||||||||| Sbjct 14550951 CTGCCTTCCTTGAAGGTGGTAGCCATTTCTCAGGCTCCCTCTCC 14550994 >seq15 Length=80783214 Score = 104 bits (114), Expect = 7e-20 Identities = 92/112 (82%), Gaps = 5/112 (4%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG--ATTGCTTA 452 ||||| | | ||||||||||||||||| || | ||| ||||||||| | | ||| | Sbjct 17047473 CAAATGAGCCATAACTGATTTAATGAGTTATCCACAGATTCACTGTACTGGGAGTGC--A 17047416 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| ||| |||||||||||||||||||||||| || |||||||||| Sbjct 17047415 TACTTAGATATGTGTGGCTTAATCTTTGAGACAAGCATGTG-CTACTGGCAG 17047365 Score = 82.4 bits (90), Expect = 2e-13 Identities = 80/100 (80%), Gaps = 5/100 (5%) Strand=Plus/Minus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 |||||||||||||||| | || |||||||||||||| || || |||| | ||| Sbjct 1938593 ATAACTGATTTAATGAACTATCTGCAGTTTCACTGTA---ATGGC-CATACACACTTATG 1938538 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||| ||||| |||||||| ||||||||| || ||||||| Sbjct 1938537 CATGACTTAACCTTTGAGATAAGCATATG-CTCCTGGCAG 1938499 >seq25 Length=45223504 Score = 95.1 bits (104), Expect = 4e-17 Identities = 88/110 (80%), Gaps = 5/110 (5%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| ||||||||||| |||||||||| |||||||||||| || || | | Sbjct 9409321 CAAAGGAACCATAACTGATTTTGTGAGCCATTC--AGTTTCACTGTACTGACTGTGTGTT 9409378 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||| |||||||| ||| | |||||||| |||||||||| Sbjct 9409379 CTTAGACATGCAGGGCTTAATATTTAAAACAAGCAT---GCTACTGGCAG 9409425 >seq2881 Length=26507 Score = 93.3 bits (102), Expect = 1e-16 Identities = 106/142 (75%), Gaps = 8/142 (6%) Strand=Plus/Minus Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149 |||||||||||||||| |||||| |||| || ||||||||||||||| || || ||||| Sbjct 21796 CCTGCTGCCTTCCTTGAATGTGGGAGCCATTAATCAGGCTCCCTCTCCTGACTCAAACCC 21737 Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATA 209 | ||||||| | || | ||| |||| | | |||||||| || | |||| Sbjct 21736 TGATTCCCCATCAC----TCATAAGTAGGTATGAGA----ACTACCATCAAAGGCTGATT 21685 Query 210 GGGCAGAAATTTGAATGAACCA 231 |||| | ||||||||||| || Sbjct 21684 AGGCAAACATTTGAATGAATCA 21663 >seq17 Length=72251135 Score = 93.3 bits (102), Expect = 1e-16 Identities = 106/142 (75%), Gaps = 8/142 (6%) Strand=Plus/Plus Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149 |||||||||||||||| |||||| |||| || ||||||||||||||| || || ||||| Sbjct 43582071 CCTGCTGCCTTCCTTGAATGTGGGAGCCATTAATCAGGCTCCCTCTCCTGACTCAAACCC 43582130 Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATA 209 | ||||||| | || | ||| |||| | | |||||||| || | |||| Sbjct 43582131 TGATTCCCCATCAC----TCATAAGTAGGTATGAGA----ACTACCATCAAAGGCTGATT 43582182 Query 210 GGGCAGAAATTTGAATGAACCA 231 |||| | ||||||||||| || Sbjct 43582183 AGGCAAACATTTGAATGAATCA 43582204 >seq20 Length=51049468 Score = 91.5 bits (100), Expect = 4e-16 Identities = 81/99 (82%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||| ||| || ||||||| ||| |||||||||||||| | ||| | ||||||||| Sbjct 22045684 ATACCTGCTTGAATGAGCTATTTGCAGTTTCACTGTACTGGTTGTGCGTT-TTAGACATG 22045626 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||||||||||||||||||| ||||||||| ||| |||| Sbjct 22045625 CATGGCTTAATCTTTGAGATAAGCATATG-TTACCGGCA 22045588 >seq1 Length=275406953 Score = 91.5 bits (100), Expect = 4e-16 Identities = 81/100 (81%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 |||||||||||||||||| ||| |||||||| |||| | | ||||||||||| Sbjct 163061724 ATAACTGATTTAATGAGCTGTTCACAGTTTCAGTGTACTGGCCATATGTACTTAGACATT 163061665 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| ||||||||||||||||||| ||||| |||||| || Sbjct 163061664 CATAGCTTAATCTTTGAGACAAGTATATG-TTACTGGTAG 163061626 >seq13 Length=82951069 Score = 78.8 bits (86), Expect = 3e-12 Identities = 72/91 (79%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 26 AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTG 85 |||||| | | ||| ||||| ||||||||||||| ||| ||| ||||||||||| Sbjct 13971545 AAAGAGTCTTATATTGTTATTTTCCATCACTACCTCCCCTGGTCAGGAGTGGGTAATTTG 13971604 Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGC 116 | | | ||||| ||| ||||||||||||||| Sbjct 13971605 CACTCTTGCTGTCTTTCTTGGATGTGGTAGC 13971635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510317441536